New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1720832 =	49 (0.880)	4 (0.080)	4/246	NT	8.6%	coding (572/1101 nt)	PP_1516	RND membrane fusion protein
	?	NC_002947	1720890 =	38 (0.710)					coding (630/1101 nt)	PP_1516	RND membrane fusion protein

CAACCAGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTTCA  >  NC_002947/1720743‑1721038                                                                                                                                                    |                                                                                                                                                     cAACCAGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCg                                                                                                                                                      >  5:223957/1‑148 (MQ=255)   aCCAGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGag                                                                                                                                                   <  6:8926/149‑1 (MQ=255)    ccAGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCACCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGagc                                                                                                                                                  <  5:112197/149‑1 (MQ=255)      aGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCTCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGagcag                                                                                                                                                <  6:327845/149‑1 (MQ=255)      aGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGagcag                                                                                                                                                <  6:74534/149‑1 (MQ=255)                tGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGtt                                                                                                                                           >  5:225247/1‑144 (MQ=255)                tGCCGTATTGCGGGCTCCGCAGGCCGGGGTGAGCGCCAAGCGCCTGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGtt                                                                                                                                           <  6:225247/144‑1 (MQ=255)                 gCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCg                                                                                                                                     >  6:72648/1‑149 (MQ=255)                           gtgcgCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGGGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCtgtg                                                                                                                           <  4:88277/149‑1 (MQ=255)                                 cgcAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCaa                                                                                                                     >  3:229513/1‑149 (MQ=255)                                    aGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCg                                                                                                                  <  6:223957/149‑1 (MQ=255)                                           ggTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCg                                                                                                           >  4:7086/1‑149 (MQ=255)                                               aTCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTgg                                                                                                        <  6:180178/148‑1 (MQ=255)                                                 cGCCAAGCGCCAGGTTGAAGTGGGCCAGGCGGTCGCCGCCGGGCAGACCGTTTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAg                                                                                                      <  8:283882/148‑1 (MQ=255)                                                  gCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCt                                                                                                    <  7:157287/149‑1 (MQ=255)                                                  gCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCt                                                                                                    <  4:229513/149‑1 (MQ=255)                                                       gcgcCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGt                                                                                               <  5:72648/149‑1 (MQ=255)                                                                    gTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGgc                                                                                  >  6:286065/1‑149 (MQ=255)                                                                    gTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGgc                                                                                  >  6:290908/1‑149 (MQ=255)                                                                            ggtggtCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCAc                                                                                          <  1:148021/133‑1 (MQ=255)                                                                            ggtggtCGCCGCCGGGCAGAACGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCAc                                                                                          >  2:148021/1‑133 (MQ=255)                                                                                gtCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAgcagca                                                                                                                                              >  4:137861/1‑77 (MQ=255)                                                                                gtCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAgcagca                                                                                                                                              <  3:137861/77‑1 (MQ=255)                                                                                    ccgccgGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGgcgc                                                                  <  5:290908/149‑1 (MQ=255)                                                                                    ccgccgGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGgcgc                                                                  <  5:286065/149‑1 (MQ=255)                                                                                     cgccgGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCa                                                                 >  8:189704/1‑149 (MQ=255)                                                                                     cgccgGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCa                                                                 >  8:79432/1‑149 (MQ=255)                                                                                          ggcaggccgatggccacttctcgctcgccatcggcggcaagggtgaacacggtctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCtgt                                                                                                  <  1:244878‑M2/53‑1 (MQ=255)                                                                                          ggcaggccgatggccacttctcgctcgccatcggcggcaagggtgaacacggtctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCtgt                                                                                                  >  2:244878‑M2/59‑111 (MQ=255)                                                                                           gcaggccgatggccacttctcgctcgccatcggcggcaagggtgaacacggtctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTcgc                                                            >  1:355125‑M2/58‑148 (MQ=255)                                                                                                       cACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTcgc                                                            <  1:143159/136‑1 (MQ=255)                                                                                                       cACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCgg                                               >  4:244404/1‑149 (MQ=255)                                                                                                          ccTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGgc                                                                    <  3:178042/125‑1 (MQ=255)                                                                                                          ccTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGgc                                                                    >  4:178042/1‑125 (MQ=255)                                                                                                           cTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGgccg                                            >  8:204826/1‑148 (MQ=255)                                                                                                           cTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGgccg                                            <  7:204826/148‑1 (MQ=255)                                                                                                                cgccgATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGAcc                                      >  2:21506/1‑149 (MQ=255)                                                                                                                 gccgATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTcgc                                                            <  5:249282/126‑1 (MQ=255)                                                                                                                 gccgATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTcgc                                                            >  6:249282/1‑126 (MQ=255)                                                                                                                               agaAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCAccc                                                                                        >  1:312497/1‑84 (MQ=255)                                                                                                                               agaAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCAccc                                                                                        <  2:312497/84‑1 (MQ=255)                                                                                                                                 aaGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTc                     >  5:169945/1‑149 (MQ=255)                                                                                                                                      gCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCgcggc                <  7:189704/149‑1 (MQ=255)                                                                                                                                       ccATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCgcggcg               >  1:279217/1‑149 (MQ=255)                                                                                                                                        acacggtctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGgcgc              <  2:355125‑M2/137‑1 (MQ=255)                                                                                                                                               cggcgggAGCAGCAGTTCGCCCGCCTCGCGGTGGGGCAACGGGTGAGCGTGCAGCTGTGGGCGCACCCGGAGGCGCGTTTCGAGGGGCGCATTCGCGAGGTGTCAGCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGc       <  4:42724/144‑1 (MQ=255)                                                                                                                                                tgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGcc      >  7:42369‑M2/5‑149 (MQ=255)                                                                                                                                                  ccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCtt    <  1:21506‑M2/147‑1 (MQ=255)                                                                                                                                                    ggAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTTca  >  1:248078/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CAACCAGGCCGAATATGCCGTATTGCGTGCGCCGCAGGCCGGGGTGATCGCCAAGCGCCAGGTTGAAGTGGGCCAGGTGGTCGCCGCCGGGCAGACCGTGTTCACCCTTGCCGCCGATGGCGAGCGAGAAGTGGCCATCGGCCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTTCA  >  NC_002947/1720743‑1721038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.