New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1728646	32 (0.580)	6 (0.120)	6/240	NT	15.6%	intergenic (+40/+83)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
	?	NC_002947	= 1728683	35 (0.670)					intergenic (+77/+46)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein

TCGGGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1728495‑1728646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaTACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCTCCTACGGCTTGAAACCAGAGGCTCAGAGGCCCACTACGTCTTCGGCTTGCAGGCCTTTCTGGCCCTGCACGCAGGCGTACTCCACCCGCTG  <  NC_002947/1728683‑1728538                                                                                                                                                                                                                                                                                                             TCGGGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGC                                                                                                                                                       >  3:311661/1‑149    GGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACCGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGA                                                                                                                                                     <  1:273532/149‑1                                           GCAGCGGGTGGAGTACGCCTGCGTGTAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCG                                                                                                                                                        >  7:308072/1‑106                                           GCAGCGGGTGGAGTACGCCTGCGTGTAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCG                                                                                                                                                        <  8:308072/106‑1                                           GCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTT                                                                                                             >  5:197833/1‑149                                                GGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGG                                                                                                        <  6:197833/149‑1                                                             CTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGG                                                                                                       >  3:276357/1‑137                                                             CTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGG                                                                                                       <  4:276357/137‑1                                                                                          CCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCT                                                                                             >  5:45081/1‑118                                                                                          CCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCT                                                                                             <  6:45081/118‑1                                                                                                                                                   CCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCTCCTACGGCTTGAAACCAGAGGCTCAGAGGCCCACTACGTCTTCGGCTTGCAGGCCTTTCTGGCCCTGCACGCAGGCGTACTCCACCC      >  7:136264/1‑149                                                                                                                                                       GAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCTCCTACGGCTTGAAACCAGAGGCTCAGAGGCCCACTACGTCTTCAGCTTGCAGGCCTTTCTGGCCCTGCACGCAGGCGTACTCCACCCGCTG  <  8:88007/149‑1                                                                                                                                                                                                                                                                                                             TCGGGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGA‑CGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1728495‑1728646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaTACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGCAAGCCCGCTCCTACGGCTTGAAACCAGAGGCTCAGAGGCCCACTACGTCTTCGGCTTGCAGGCCTTTCTGGCCCTGCACGCAGGCGTACTCCACCCGCTG  <  NC_002947/1728683‑1728538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.