New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1728646	32 (0.580)	6 (0.120)	6/240	NT	15.6%	intergenic (+40/+83)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
	?	NC_002947	= 1728683	35 (0.670)					intergenic (+77/+46)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein

CAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCC  >  NC_002947/1728538‑1728825                                                                                                                                                  |                                                                                                                                               cAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCTGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttc                                                                                                                                             <  8:88007‑M2/149‑4 (MQ=255)     gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgg                                                                                                                                         >  7:136264‑M2/1‑142 (MQ=255)                gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt                                                                                                                               >  7:219653/1‑148 (MQ=255)                gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt                                                                                                                               <  8:219653/148‑1 (MQ=255)                 ccTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc                                                                                                                             <  2:44578/149‑1 (MQ=255)                                 gAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCaa                                                                                                             <  4:311661/149‑1 (MQ=255)                                       ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc                                                                                                                                  >  8:287949/1‑122 (MQ=255)                                       ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc                                                                                                                                  <  7:287949/122‑1 (MQ=255)                                           cAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGtt                                                                                                   >  7:25381/1‑149 (MQ=255)                                                    gACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgatg                                                                                           >  5:149082/1‑148 (MQ=255)                                                      cGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTAc                                                                                        <  5:133290/149‑1 (MQ=255)                                                          gTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTGGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGc                                                                                      >  6:41812/1‑147 (MQ=255)                                                            gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa                                                                                                                    <  4:8861/115‑1 (MQ=255)                                                            gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa                                                                                                                    >  3:8861/1‑115 (MQ=255)                                                                ctctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATATACGCCAGGTGAt                                                                              >  3:92274/1‑149 (MQ=255)                                                                   tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTc                                                                           >  3:39917/1‑149 (MQ=255)                                                                        cgctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCtt                                                                      <  8:328374/147‑1 (MQ=255)                                                                                            aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggtaaacccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcgg                                                                                 <  6:45081‑M2/118‑64 (MQ=255)                                                                                            aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggtaaacccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcgg                                                                                 >  5:45081‑M2/1‑55 (MQ=255)                                                                                             gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa                                                 <  7:103934/149‑1 (MQ=255)                                                                                             gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa                                                 <  8:25381/149‑1 (MQ=255)                                                                                                      cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcag                                                    >  3:276357‑M2/1‑45 (MQ=255)                                                                                                      cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcag                                                    <  4:276357‑M2/137‑93 (MQ=255)                                                                                                      cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCgg                                         <  7:88007/148‑1 (MQ=255)                                                                                                       ccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccaccc                                       <  6:197833‑M2/149‑106 (MQ=255)                                                                                                        cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGAtt                                                                             <  7:333443/110‑1 (MQ=255)                                                                                                        cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGAtt                                                                             >  8:333443/1‑110 (MQ=255)                                                                                                        cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACTGTCGGCGCTGATGCGGACCCAGCGGTCa                                      <  4:39917/149‑1 (MQ=255)                                                                                                            aaGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccacccgctgc                                  >  5:197833‑M2/1‑39 (MQ=255)                                                                                                               cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGt                                        >  6:185322/1‑140 (MQ=255)                                                                                                               cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGt                                        <  5:185322/140‑1 (MQ=255)                                                                                                                agcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc                              <  6:149082/149‑1 (MQ=255)                                                                                                                  ccaccaCGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATcttctt                            <  5:41812/149‑1 (MQ=255)                                                                                                                   caccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCttcttc                           >  8:212567/1‑149 (MQ=255)                                                                                                                           tGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCtt                   >  4:165288/1‑149 (MQ=255)                                                                                                                                   aCGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGa                                                       >  2:22573/1‑105 (MQ=255)                                                                                                                                   aCGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGa                                                       <  1:22573/105‑1 (MQ=255)                                                                                                                                   aCGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGAcc           >  8:122519/1‑149 (MQ=255)                                                                                                                                            gCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGAcc           >  6:81655/1‑140 (MQ=255)                                                                                                                                            gCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGAcc           <  5:81655/140‑1 (MQ=255)                                                                                                                                            gCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCAccc  >  2:93063/1‑149 (MQ=255)                                                                                                                                             cccGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCtt                                                                      >  8:276636/1‑80 (MQ=255)                                                                                                                                             cccGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCtt                                                                      <  7:276636/80‑1 (MQ=255)                                                                                                                                              ccGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc                                                    >  5:74175/1‑97 (MQ=255)                                                                                                                                              ccGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc                                                    <  6:74175/97‑1 (MQ=255)                                                                                                                                                gTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc                                                    >  5:64402/1‑95 (MQ=255)                                                                                                                                                gTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc                                                    <  6:64402/95‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCC  >  NC_002947/1728538‑1728825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.