| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1728646 | 32 (0.580) | 6 (0.120) | 6/240 | NT | 15.6% | intergenic (+40/+83) | cspA‑I/PP_1523 | major cold shock protein/hypothetical protein |
| ? | NC_002947 | = 1728683 | 35 (0.670) | intergenic (+77/+46) | cspA‑I/PP_1523 | major cold shock protein/hypothetical protein | |||||
GATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAT > NC_002947/1728501‑1728793 | gATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGCCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAag > 8:136264/1‑147 (MQ=255) cgcgGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGcc < 5:1167/148‑1 (MQ=255) gggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGccacca < 3:248966/143‑1 (MQ=255) gggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGccacca > 4:248966/1‑143 (MQ=255) gggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTgg > 1:44578/1‑149 (MQ=255) gcttCGTACCCTTGTCGAATGGCAGCGGGTGGAGTACGCCTTCTTGCAGGGCCAGAAAGGCCTGCAAGCCTAAGACTTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt < 7:224880/146‑1 (MQ=255) gCATCGTACCCTGGTCGAAGGGCAGCGGGTTGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt < 3:271638/149‑1 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACggg > 2:186317/1‑148 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg < 3:276786/147‑1 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg > 4:276786/1‑147 (MQ=255) cTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCa > 8:103934/1‑149 (MQ=255) gAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGcc < 1:186317/148‑1 (MQ=255) gCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgctt > 5:197833‑M1/1‑110 (MQ=255) cAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCTGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttc < 8:88007‑M2/149‑4 (MQ=255) gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcgg < 6:197833‑M1/149‑45 (MQ=255) gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgg > 7:136264‑M2/1‑142 (MQ=255) gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt < 8:219653/148‑1 (MQ=255) gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt > 7:219653/1‑148 (MQ=255) ccTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc < 2:44578/149‑1 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcggg < 4:276357‑M1/137‑46 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcggg > 3:276357‑M1/1‑92 (MQ=255) gAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCaa < 4:311661/149‑1 (MQ=255) ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc > 8:287949/1‑122 (MQ=255) ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc < 7:287949/122‑1 (MQ=255) cAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGtt > 7:25381/1‑149 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGTTTACCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcgggcaagcccgct > 5:45081‑M1/1‑63 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGTTTACCCGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcgggcaagcccgct < 6:45081‑M1/118‑56 (MQ=255) gACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgatg > 5:149082/1‑148 (MQ=255) cGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTAc < 5:133290/149‑1 (MQ=255) gTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTGGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGc > 6:41812/1‑147 (MQ=255) gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa > 3:8861/1‑115 (MQ=255) gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa < 4:8861/115‑1 (MQ=255) ctctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATATACGCCAGGTGAt > 3:92274/1‑149 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTc > 3:39917/1‑149 (MQ=255) cgctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCtt < 8:328374/147‑1 (MQ=255) aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggtaaacccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcgg < 6:45081‑M2/118‑64 (MQ=255) aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggtaaacccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcgg > 5:45081‑M2/1‑55 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 7:103934/149‑1 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 8:25381/149‑1 (MQ=255) cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcag > 3:276357‑M2/1‑45 (MQ=255) cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcag < 4:276357‑M2/137‑93 (MQ=255) cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCgg < 7:88007/148‑1 (MQ=255) ccGCGAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccaccc > 7:136264‑M1/1‑7 (MQ=255) ccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccaccc < 6:197833‑M2/149‑106 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGAtt < 7:333443/110‑1 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGAtt > 8:333443/1‑110 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACTGTCGGCGCTGATGCGGACCCAGCGGTCa < 4:39917/149‑1 (MQ=255) gAAtacgggctatgcccgtggcagccaccgtggtggctgcttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcagcttgcaggcctttctggccctgcacgcaggcgtactccacccgctg < 8:88007‑M1/149‑147 (MQ=255) aaGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccacccgctgc > 5:197833‑M2/1‑39 (MQ=255) | GATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAT > NC_002947/1728501‑1728793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |