New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2409101	90 (1.630)	7 (0.130)	7/240	NT	7.6%	coding (2347/2742 nt)	acnA‑I	aconitate hydratase
	?	NC_002947	= 2409113	85 (1.640)					coding (2335/2742 nt)	acnA‑I	aconitate hydratase

GCAGCGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2408948‑2409101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcagGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGAGCGTATTCACCGCTCCAACCTGGTGGGCA  <  NC_002947/2409113‑2408966                                                                                                                                                                                                                                                                                                                GCAGCGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCAGGCAATCAC                                                                                                                                                            >  7:330733/1‑148  CAGCGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCA                                                                                                                                                          <  7:216396/149‑1   AGCGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAAACACCAc                                                                                                                                                         >  2:356320/1‑148     CGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAG                                                                                                                                                         >  4:11564/1‑147       GTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCA                                                                                                                                                       >  6:20721/1‑147       GTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCA                                                                                                                                                       <  5:20721/147‑1                                GGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAGGAAGGCACCCCGCTGCTGGTGATTG                                                                                                                             <  1:356320/148‑1                                                                             CCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCATGCGTTACCAGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTA                                                                                                                <  4:204437/116‑1                                                                             CCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCATGCGTTACCAGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTA                                                                                                                >  3:204437/1‑116                                                                                             CCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAGGAAGGCACCCCGCTGCTGG                                                                                                                                   <  7:273539/81‑1                                                                                             CCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAGGAAGGCACCCCGCTGCTGG                                                                                                                                   >  8:273539/1‑81                                                                                                       CCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAGGAAGGCACCCCGCTGCTGGTGA                                                                                                                                <  4:39970/74‑1                                                                                                       CCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAGGAAGGCACCCCGCTGCTGGTGA                                                                                                                                >  3:39970/1‑74                                                                                                                                                     CAGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGA                               <  7:184053/125‑1                                                                                                                                                     CAGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGA                               >  8:184053/1‑125                                                                                                                                                      AGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAGAGCTTCGAGCGTATTCACCGCTCCAACCTGGTG      >  7:165297/1‑149                                                                                                                                                      AGCAGGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGAGCGTATTCACCGCTCCAACCTGGTG      <  2:106481/149‑1                                                                                                                                                          GGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGAGCGTATTCACCGCTCCAACCTGGTGGGCA  >  8:330733/1‑149                                                                                                                                                                                                                                                                                                                GCAGCGGTAATACGCCCATGCCCACCAGGTTGGAGCGGTGAATACGCTCGAAGCTTTCTGCCAGCACGGCCTTGACCCCCAGCAGGTTGGTACCCTTGGCAGCCCAGTCGCGGCTCGAACCGGTGCCGTACTCCTGGCCGGCAATCACCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2408948‑2409101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcagGAAGGCACCCCGCTGCTGGTGATTGCCGGCCAGGAGTACGGCACCGGTTCGAGCCGCGACTGGGCTGCCAAGGGTACCAACCTGCTGGGGGTCAAGGCCGTGCTGGCAGAAAGCTTCGAGCGTATTCACCGCTCCAACCTGGTGGGCA  <  NC_002947/2409113‑2408966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.