New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3079127	49 (0.880)	4 (0.070)	4/252	NT	7.6%	coding (139/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3079160	49 (0.900)					coding (106/1410 nt)	PP_2688	hypothetical protein

AGCCACGCTCGACCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3079007‑3079127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGAACAGCGCCGGCGCGAGGCCGACCTGCTGTTTCACC  <  NC_002947/3079160‑3079124                                                                                                                                                                AGCCACGCTCGACCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGGAACAGCGCCGGCGCGAGGCCGACCTGC           >  7:146436/1‑149           GACCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGGAACAGCGCCGGCGCGAGGCCGACCTGCTGTTTCACC  <  8:146436/148‑1                                                                                         GCCATACAAGGTGAAGGTGATGCCTGCGCGGTGGAACAGCGCCGGCGCGAGGCCGACCTGCTGTT       <  7:321077/65‑1                                                                                         GCCATACAAGGTGAAGGTGATGCCTGCGCGGTGGAACAGCGCCGGCGCGAGGCCGACCTGCTGTT       >  8:321077/1‑65                                                                                                                                                                AGCCACGCTCGACCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3079007‑3079127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgGAACAGCGCCGGCGCGAGGCCGACCTGCTGTTTCACC  <  NC_002947/3079160‑3079124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.