New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3079127	49 (0.880)	4 (0.070)	4/252	NT	7.6%	coding (139/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3079160	49 (0.900)					coding (106/1410 nt)	PP_2688	hypothetical protein

CCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCATTGCGGT  >  NC_002947/3079019‑3079305                                                                                                                                              |                                                                                                                                                  ccGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAAc                                                                                                                                            <  1:253432/149‑1 (MQ=255)    tGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTc                                                                                                                                          >  4:233661/1‑148 (MQ=255)              gCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGgtgt                                                                                                                               <  2:34778/149‑1 (MQ=255)              gCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGgtgt                                                                                                                               >  4:265699/1‑149 (MQ=255)                  gcgcGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGgc                                                                                                                           <  7:32732/149‑1 (MQ=255)                    gcgGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGGGGGGTGTTGgcca                                                                                                                         <  6:37604/149‑1 (MQ=255)                    gcgGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGgcca                                                                                                                         <  3:233661/149‑1 (MQ=255)                          gctgcGCGGGATCATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGgtg                                                                                                                                >  5:230324/1‑136 (MQ=255)                              cgcgGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCgg                                                                                                                 <  7:91137/147‑1 (MQ=255)                                     tgatATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTcc                                                                                                        >  8:200447/1‑149 (MQ=255)                                           cGAAGGGGATCAGGCGCTCGGTATCCTGCTAGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATaa                                                                                                  >  1:29371/1‑149 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCTAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGaa                                                                                                            >  1:207006/1‑138 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCTAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGaa                                                                                                            <  2:207006/138‑1 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGgtg                                                                                                                                <  6:279764/118‑1 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGgtg                                                                                                                                >  5:279764/1‑118 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAAt                                                                                                 >  4:161364/1‑149 (MQ=255)                                            gAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCAGGCGCTGTGCCCGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAAt                                                                                                 >  7:102492/1‑149 (MQ=255)                                                   aTCTGGCGCTCTGTATCCTGATTGTCGCCATACAAGGTGAATGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATgcg                                                                                              <  4:90666/145‑1 (MQ=255)                                                   aTCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGACTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATgcg                                                                                              >  3:90666/1‑145 (MQ=255)                                                       ggCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAg                                                                                      >  6:245072/1‑149 (MQ=255)                                                       ggCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAg                                                                                      >  2:220285/1‑149 (MQ=255)                                                         cgcTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGtt                                                                                    <  5:2996/149‑1 (MQ=255)                                                           cTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTg                                                                                                                             <  1:126396/106‑1 (MQ=255)                                                           cTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTg                                                                                                                             >  2:126396/1‑106 (MQ=255)                                                                tATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTcc                                                                             <  1:220285/149‑1 (MQ=255)                                                                      gCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCAGTCCGCTTCg                                                                       >  4:195424/1‑149 (MQ=255)                                                                            cGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACAtt                                                                 >  5:349871/1‑149 (MQ=255)                                                                             gCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACAtt                                                                 >  2:183414/1‑148 (MQ=255)                                                                               cATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCa                                                              <  6:339778/149‑1 (MQ=255)                                                                               cATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCa                                                              <  3:265699/149‑1 (MQ=255)                                                                                aTACAAGGTGAAGGTGATGCCTGCGCGGTGAAACTGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGGAACTCCAGCGGGGTGTTGGCCAGCGAGCGGGCGAACTCCTGATTATGCTGGCGGCAGTTGCCGGCCGCTTCGTACATTTCAt                                                             <  3:161364/149‑1 (MQ=255)                                                                                aTACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCAt                                                             >  1:169311/1‑149 (MQ=255)                                                                                 tACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCAtt                                                            <  6:349871/149‑1 (MQ=255)                                                                                       gtgaaggtgaTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCg                                                                       >  1:24578/1‑132 (MQ=255)                                                                                       gtgaaggtgaTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCg                                                                       <  2:24578/132‑1 (MQ=255)                                                                                        tgaaggtgaTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGaaaaaa                                                     <  3:109596/149‑1 (MQ=255)                                                                                         gaaggtgaTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAAc                                                                                                           <  7:169957/94‑1 (MQ=255)                                                                                                aTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGTTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGa                                             >  1:162597/1‑149 (MQ=255)                                                                                                aTGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGa                                             <  1:183414/149‑1 (MQ=255)                                                                                                  gCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAAt                                                                                                 >  5:273525/1‑95 (MQ=255)                                                                                                  gCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAAt                                                                                                 <  6:273525/95‑1 (MQ=255)                                                                                                          ggTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCcaccgcgcaggcatcaccttcaccttgtatggcgacaagcaggataccgagcgcctgatccccttcgatatcatcccgcgcagcatccgcgccagcgaatggcgcacggtc                                    <  8:146436‑M2/148‑112 (MQ=255)                                                                                                            tGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTcc                                 >  1:172755/1‑149 (MQ=255)                                                                                                               aaCAGCAGGTCGGCCTCGCGCCGGCGCTGTTCcaccgcgcaggcatcaccttcaccttgtatggc                                                                                                                  >  8:321077‑M2/1‑32 (MQ=255)                                                                                                               aaCAGCAGGTCGGCCTCGCGCCGGCGCTGTTCcaccgcgcaggcatcaccttcaccttgtatggc                                                                                                                  <  7:321077‑M2/65‑34 (MQ=255)                                                                                                                aCAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTgc                             >  3:336151/1‑149 (MQ=255)                                                                                                                  agcagGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTgccg                           >  3:219217/1‑149 (MQ=255)                                                                                                                   gcagGTCGGCCTCGCGCCGGCGCTGTTCcaccgcgcaggcatcaccttcaccttgtatggcgacaagcaggataccgagcgcctgatccccttcgatatcatcccgcgcagcatccgcgccagcgaatggcgcacggtcgagcgtggct                          >  7:146436‑M2/1‑28 (MQ=255)                                                                                                                     agGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGccgccg                        >  8:91769/1‑149 (MQ=255)                                                                                                                          ggCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGcc                   <  2:169311/149‑1 (MQ=255)                                                                                                                             cTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAATAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCgg                 >  7:64335/1‑148 (MQ=255)                                                                                                                                      gcgcTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCAtt       <  7:200447/149‑1 (MQ=255)                                                                                                                                       cgcTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCATTg      <  2:172755/149‑1 (MQ=255)                                                                                                                                         cTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCATTg      >  1:306693/1‑147 (MQ=255)                                                                                                                                            ttCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCATTGCGGt  <  2:162597/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  CCGTGCGCCATTCGCTGGCGCGGATGCTGCGCGGGATGATATCGAAGGGGATCAGGCGCTCGGTATCCTGCTTGTCGCCATACAAGGTGAAGGTGATGCCTGCGCGGTGAAACAGCAGGTCGGCCTCGCGCCGGCGCTGTTCCAGCAACTCCAGCGGGGTGTTGGCCAGCCAGCGGGCGAACTCCTGATAATGCGGGCGGCAGTTGCCGTCCGCTTCGTACATTTCATTGAAAAAAGCCCGGGACATACCCACTCCTTGCCGCCGTTGCCGGCAGCTTCATTGCGGT  >  NC_002947/3079019‑3079305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.