New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3218062 =	51 (0.920)	3 (0.060)	3/242	NT	5.5%	coding (852/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3218130 =	54 (1.030)					coding (920/1407 nt)	oprJ	outer membrane protein OprJ

CCACCGTCGAACAACCCGGACATCTGCGCACTGGCGGTACCAAAGCTGCCGGTCAGGCTGATACGCGGGAAAAACGCTGCCCGCGCCGCGCCGATATCGGCATTGCGCGCGCGCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3218211‑3218062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGG  >  NC_002947/3218130‑3218211                                                                                                                                                                                                                                          CCACCGTCGAACAACCCGGACATCTGCGCACTGGCGGTACCAAAGCTGCCGGTCAGGCTGATACGCGGGAAACACGCTGCCCGCGCCGCGCCGATATCGGCATTGCGCGCGCGCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCG                                                                                     >  4:266220/1‑149                                                                                    CGCCGCGCCGATATCGGCATTGCGCGCGCCCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGG  >  1:207562/1‑149                                                                                              ATATCGGCATTGCGCGCGCGCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCGCGGGCAGCGTTTTTCCCGCGTAT                                                              >  5:24775/1‑79                                                                                              ATATCGGCATTGCGCGCGCGCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCGCGGGCAGCGTTTTTCCCGCGTAT                                                              <  6:24775/79‑1                                                                                                                                                                                                                                          CCACCGTCGAACAACCCGGACATCTGCGCACTGGCGGTACCAAAGCTGCCGGTCAGGCTGATACGCGGGAAAAACGCTGCCCGCGCCGCGCCGATATCGGCATTGCGCGCGCGCAGCCGGTGTTCGGCGGCGAGGATATCGGGGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3218211‑3218062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGG  >  NC_002947/3218130‑3218211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.