| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3218062 = | 51 (0.920) | 3 (0.060) | 3/242 | NT | 5.5% | coding (852/1407 nt) | oprJ | outer membrane protein OprJ |
| ? | NC_002947 | 3218130 = | 54 (1.030) | coding (920/1407 nt) | oprJ | outer membrane protein OprJ | |||||
AAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACGCCGGGCGCA > NC_002947/3217982‑3218270 | aaGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGTGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGgcgcggcgcg > 3:266220/1‑149 (MQ=255) gCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCgttgtt > 8:83473/1‑149 (MQ=255) aaCGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc < 4:323055/147‑1 (MQ=255) gCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg > 5:270764/1‑148 (MQ=255) gCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg > 3:318944/1‑148 (MQ=255) gAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCCGCGTTTTTCCCGCGTATCAGCCt > 6:183233/1‑149 (MQ=255) gCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa > 3:57039/1‑149 (MQ=255) ccGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGAc < 3:276744/149‑1 (MQ=255) gATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCg < 4:57039/149‑1 (MQ=255) gTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAg > 6:343602/1‑149 (MQ=255) cTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt < 6:270764/149‑1 (MQ=255) aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc > 1:169135/1‑121 (MQ=255) aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc < 2:169135/121‑1 (MQ=255) aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt < 5:343602/146‑1 (MQ=255) aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTgg > 7:171211/1‑149 (MQ=255) tGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTa > 6:166610/1‑149 (MQ=255) aTTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACAGGCAGCTTTGGTACCGc > 2:209106/1‑149 (MQ=255) tgtgCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGc > 4:259968/1‑147 (MQ=255) cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTgcg < 1:192459/149‑1 (MQ=255) cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCCTATCAGCCTGACCGGCACCTTTGGAACCGCCAGTgcg > 2:192459/1‑149 (MQ=255) gcgcCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGAt < 3:12213/149‑1 (MQ=255) ccGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTc < 8:286734/149‑1 (MQ=255) tCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCgg < 2:222215/149‑1 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa < 4:1804/107‑1 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa > 3:1804/1‑107 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt > 2:295511/1‑121 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt < 1:295511/121‑1 (MQ=255) ttGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAAGACCGGATGCGCGCGCGGAATGCCGATATGGGCGCGGCGCGGGCAGCGTGTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGgttgtt < 5:183233/149‑1 (MQ=255) gATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTc < 6:360215/148‑1 (MQ=255) tCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGAc < 4:318944/149‑1 (MQ=255) gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCTCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg < 8:171211/149‑1 (MQ=255) gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg < 8:155415/149‑1 (MQ=255) cgccgcgccgatatcggcattgcgcgcgcccagccggtgttcggcggcgaggatatcggggcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTgg > 1:207562‑M2/68‑149 (MQ=255) CGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTGTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTgg > 4:266220‑M1/1‑149 (MQ=255) ccGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTcgcg > 5:63736/1‑148 (MQ=255) atatcggcattgcgcgcgcgcagccggtgttcggcggcgaggatatcggggcggcgcGGGCAGCGTTTTTCCCGCGTAt < 6:24775‑M2/22‑1 (MQ=255) atatcggcattgcgcgcgcgcagccggtgttcggcggcgaggatatcggggcggcgcGGGCAGCGTTTTTCCCGCGTAt > 5:24775‑M2/58‑79 (MQ=255) atatCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGc < 5:166610/149‑1 (MQ=255) atCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTg > 7:245966/1‑149 (MQ=255) atCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTg > 3:13651/1‑149 (MQ=255) tCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTgg < 6:63736/149‑1 (MQ=255) ccTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt > 3:110135/1‑93 (MQ=255) ccTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt < 4:110135/93‑1 (MQ=255) cTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCgg > 1:206986/1‑86 (MQ=255) cTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCgg < 2:206986/86‑1 (MQ=255) cTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGgttgtt > 7:123102/1‑125 (MQ=255) cTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGgttgtt < 8:123102/125‑1 (MQ=255) ccgccgAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTc < 8:245966/149‑1 (MQ=255) ccgccgAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTc < 3:259968/149‑1 (MQ=255) ccgAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATg > 1:85112/1‑149 (MQ=255) gAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGcc > 2:116953/1‑149 (MQ=255) aaCACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCg < 2:85112/149‑1 (MQ=255) ggCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTg > 3:157747/1‑149 (MQ=255) gcgcgcgcAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTg > 7:261862/1‑149 (MQ=255) gcgcgcgcAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGATCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTg > 6:367656/1‑149 (MQ=255) cgcgcgcAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAg > 1:17872/1‑88 (MQ=255) cgcgcgcAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAg < 2:17872/88‑1 (MQ=255) gcgcAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCgt > 1:68254/1‑149 (MQ=255) cGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACg > 8:161263/1‑149 (MQ=255) ggcgcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTgg > 3:113167/1‑53 (MQ=255) ggcgcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTgg < 4:113167/53‑1 (MQ=255) ggcgcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACGCCGGgc < 5:64360/148‑1 (MQ=255) ggcgcggcgcGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACGCCGGgc < 2:68254/148‑1 (MQ=255) cgcggcgcggGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACGCCGGGCGCa < 1:116953/149‑1 (MQ=255) | AAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGGTGGCTCGCGTAGCTGGGCCTTCATGCCGCAGCTGTCGCTGCCGTTGTTCGACGCCGGGCGCA > NC_002947/3217982‑3218270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |