New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3218062 =51 (0.920)3 (0.060) 3/242 NT 5.5% coding (852/1407 nt) oprJ outer membrane protein OprJ
?NC_002947 3218130 = 54 (1.030)coding (920/1407 nt) oprJ outer membrane protein OprJ

ACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGG  >  NC_002947/3217916‑3218208
                                                                                                                                                   |                                                                                                                                                  
aCCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAgcg                                                                                                                                                  >  5:8907/1‑149 (MQ=255)
       gcCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGcccc                                                                                                                                           >  5:360215/1‑149 (MQ=255)
       gcCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGcccc                                                                                                                                           <  6:362157/149‑1 (MQ=255)
        ccAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCg                                                                                                                                          <  5:271734/149‑1 (MQ=255)
         cAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAgcgc                                                                                                                                                 >  8:305446/1‑141 (MQ=255)
         cAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAgcgc                                                                                                                                                 <  7:305446/141‑1 (MQ=255)
                gcCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTc                                                                                                                                  <  6:122175/149‑1 (MQ=255)
                 ccAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTcg                                                                                                                                 <  4:1843/149‑1 (MQ=255)
                   aGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTcgcc                                                                                                                               <  6:117424/149‑1 (MQ=255)
                       cTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg                                                                                                                           <  6:8907/149‑1 (MQ=255)
                          ctaCGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATCTGTGCCGGGCGCGCCGTCGGCATTGATCGATCGCCGCCCCTATATCCTCGccgccg                                                                                                                           <  1:98867/145‑1 (MQ=255)
                          cAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGaa                                                                                                                         >  4:12213/1‑148 (MQ=255)
                             cgcgCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACAcc                                                                                                                     >  4:62677/1‑149 (MQ=255)
                              gcgaTGGTGGTGTTGATGGTCAGTGCCGAGGCGGCGAATTCGATGCACGATGAACGCCCGGATGAGCCGTTGGTGCTCAATGAGTTTGTGCCGGGCGCGCCGTCGGCATTGATCTTGAGCCGCCACGATTTCCTCGCCGCCGATCACCg                                                                                                                    <  8:163680/149‑1 (MQ=255)
                                          ttGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg                                                                                                                           >  4:326943/1‑130 (MQ=255)
                                          ttGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg                                                                                                                           <  3:326943/130‑1 (MQ=255)
                                                   aGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGa                                                                                               >  1:222215/1‑149 (MQ=255)
                                                       ccGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATc                                                                                           >  7:286734/1‑149 (MQ=255)
                                                           ggcggcCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggcg                                                                                       >  6:64360/1‑149 (MQ=255)
                                                             cggcCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggcgcg                                                                                     >  7:155415/1‑149 (MQ=255)
                                                                 ccaccgtcgaacaacccggacatctgcgcactggcggtaccaaagctgccggtcaggctgatacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGGGCGCGCGCAATGCCGATATcggcgcggcg                                                                                  >  1:207562‑M1/83‑149 (MQ=255)
                                                                 cAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCggcgcggcgc                                                                                 <  3:62677/149‑1 (MQ=255)
                                                                  aaGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGTGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGgcgcggcgcg                                                                                >  3:266220/1‑149 (MQ=255)
                                                                       gATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggc                                                                                        <  6:170232/136‑1 (MQ=255)
                                                                       gATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggc                                                                                        >  5:170232/1‑136 (MQ=255)
                                                                              gCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCgttgtt                                                                    >  8:83473/1‑149 (MQ=255)
                                                                                  aaCGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTgc                                                                                                               >  2:225706/1‑102 (MQ=255)
                                                                                  aaCGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTgc                                                                                                               <  1:225706/102‑1 (MQ=255)
                                                                                  aaCGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc                                                                  <  4:323055/147‑1 (MQ=255)
                                                                                     gCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg                                                              >  3:318944/1‑148 (MQ=255)
                                                                                     gCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg                                                              >  5:270764/1‑148 (MQ=255)
                                                                                             gAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCCGCGTTTTTCCCGCGTATCAGCCt                                                     >  6:183233/1‑149 (MQ=255)
                                                                                               gCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa                                                   >  3:57039/1‑149 (MQ=255)
                                                                                                ccGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGAc                                                  <  3:276744/149‑1 (MQ=255)
                                                                                                  gATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCg                                                <  4:57039/149‑1 (MQ=255)
                                                                                                      gTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAg                                            >  6:343602/1‑149 (MQ=255)
                                                                                                         cTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt                                         <  6:270764/149‑1 (MQ=255)
                                                                                                            aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc                                                                  <  2:169135/121‑1 (MQ=255)
                                                                                                            aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc                                                                  >  1:169135/1‑121 (MQ=255)
                                                                                                            aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt                                         <  5:343602/146‑1 (MQ=255)
                                                                                                            aaTGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTgg                                      >  7:171211/1‑149 (MQ=255)
                                                                                                              tGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTa                                    >  6:166610/1‑149 (MQ=255)
                                                                                                                  aTTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACAGGCAGCTTTGGTACCGc                                >  2:209106/1‑149 (MQ=255)
                                                                                                                     tgtgCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGc                                >  4:259968/1‑147 (MQ=255)
                                                                                                                          cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTgcg                         <  1:192459/149‑1 (MQ=255)
                                                                                                                          cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCCTATCAGCCTGACCGGCACCTTTGGAACCGCCAGTgcg                         >  2:192459/1‑149 (MQ=255)
                                                                                                                             atacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGatat                                                                                            <  6:24775‑M1/57‑1 (MQ=255)
                                                                                                                             atacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGatat                                                                                            >  5:24775‑M1/23‑79 (MQ=255)
                                                                                                                               gcgcCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGAt                    <  3:12213/149‑1 (MQ=255)
                                                                                                                                  ccGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTc                 <  8:286734/149‑1 (MQ=255)
                                                                                                                                     tCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCgg              <  2:222215/149‑1 (MQ=255)
                                                                                                                                          aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa                                                   >  3:1804/1‑107 (MQ=255)
                                                                                                                                          aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa                                                   <  4:1804/107‑1 (MQ=255)
                                                                                                                                          aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt                                     >  2:295511/1‑121 (MQ=255)
                                                                                                                                          aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt                                     <  1:295511/121‑1 (MQ=255)
                                                                                                                                           ttGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAAGACCGGATGCGCGCGCGGAATGCCGATATGGGCGCGGCGCGGGCAGCGTGTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGgttgtt        <  5:183233/149‑1 (MQ=255)
                                                                                                                                             gATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTc       <  6:360215/148‑1 (MQ=255)
                                                                                                                                               tCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGAc    <  4:318944/149‑1 (MQ=255)
                                                                                                                                                 gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCTCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg  <  8:171211/149‑1 (MQ=255)
                                                                                                                                                 gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg  <  8:155415/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
ACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATTGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGG  >  NC_002947/3217916‑3218208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.