New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3218062 = | 51 (0.920) | 3 (0.060) | 3/242 | NT | 5.5% | coding (852/1407 nt) | oprJ | outer membrane protein OprJ |
? | NC_002947 | 3218130 = | 54 (1.030) | coding (920/1407 nt) | oprJ | outer membrane protein OprJ |
ACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGG > NC_002947/3217916‑3218208 | aCCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAgcg > 5:8907/1‑149 (MQ=255) gcCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGcccc > 5:360215/1‑149 (MQ=255) gcCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGcccc < 6:362157/149‑1 (MQ=255) ccAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCg < 5:271734/149‑1 (MQ=255) cAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAgcgc > 8:305446/1‑141 (MQ=255) cAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAgcgc < 7:305446/141‑1 (MQ=255) gcCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTc < 6:122175/149‑1 (MQ=255) ccAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTcg < 4:1843/149‑1 (MQ=255) aGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTcgcc < 6:117424/149‑1 (MQ=255) cTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg < 6:8907/149‑1 (MQ=255) ctaCGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACATCTGTGCCGGGCGCGCCGTCGGCATTGATCGATCGCCGCCCCTATATCCTCGccgccg < 1:98867/145‑1 (MQ=255) cAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGaa > 4:12213/1‑148 (MQ=255) cgcgCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACAcc > 4:62677/1‑149 (MQ=255) gcgaTGGTGGTGTTGATGGTCAGTGCCGAGGCGGCGAATTCGATGCACGATGAACGCCCGGATGAGCCGTTGGTGCTCAATGAGTT‑TGTGCCGGGCGCGCCGTCGGCATTGATCTTGAGCCGCCACGATTTCCTCGCCGCCGATCACCg < 8:163680/149‑1 (MQ=255) ttGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg > 4:326943/1‑130 (MQ=255) ttGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGccgccg < 3:326943/130‑1 (MQ=255) aGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGa > 1:222215/1‑149 (MQ=255) ccGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATc > 7:286734/1‑149 (MQ=255) ggcggcCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggcg > 6:64360/1‑149 (MQ=255) cggcCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggcgcg > 7:155415/1‑149 (MQ=255) ccaccgtcgaacaacccggacatctgcgcactggcggtaccaaagctgccggtcaggctgatacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGGGCGCGCGCAATGCCGATATcggcgcggcg > 1:207562‑M1/83‑149 (MQ=255) cAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCggcgcggcgc < 3:62677/149‑1 (MQ=255) aaGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGTGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGgcgcggcgcg > 3:266220/1‑149 (MQ=255) gATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggc < 6:170232/136‑1 (MQ=255) gATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATcggc > 5:170232/1‑136 (MQ=255) gCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCgttgtt > 8:83473/1‑149 (MQ=255) aaCGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTgc > 2:225706/1‑102 (MQ=255) aaCGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTgc < 1:225706/102‑1 (MQ=255) aaCGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc < 4:323055/147‑1 (MQ=255) gCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg > 3:318944/1‑148 (MQ=255) gCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCcgcg > 5:270764/1‑148 (MQ=255) gAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCCGCGTTTTTCCCGCGTATCAGCCt > 6:183233/1‑149 (MQ=255) gCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa > 3:57039/1‑149 (MQ=255) ccGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGAc < 3:276744/149‑1 (MQ=255) gATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCg < 4:57039/149‑1 (MQ=255) gTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAg > 6:343602/1‑149 (MQ=255) cTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt < 6:270764/149‑1 (MQ=255) aaTGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc < 2:169135/121‑1 (MQ=255) aaTGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTcc > 1:169135/1‑121 (MQ=255) aaTGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCtt < 5:343602/146‑1 (MQ=255) aaTGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTgg > 7:171211/1‑149 (MQ=255) tGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTa > 6:166610/1‑149 (MQ=255) aT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACAGGCAGCTTTGGTACCGc > 2:209106/1‑149 (MQ=255) tgtgCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGc > 4:259968/1‑147 (MQ=255) cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTgcg < 1:192459/149‑1 (MQ=255) cGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGCCAGCGTTTTTCCCGCCTATCAGCCTGACCGGCACCTTTGGAACCGCCAGTgcg > 2:192459/1‑149 (MQ=255) atacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGatat < 6:24775‑M1/57‑1 (MQ=255) atacgcgggaaaaacgctgcccGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGatat > 5:24775‑M1/23‑79 (MQ=255) gcgcCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGAt < 3:12213/149‑1 (MQ=255) ccGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTc < 8:286734/149‑1 (MQ=255) tCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCgg < 2:222215/149‑1 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa > 3:1804/1‑107 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGa < 4:1804/107‑1 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt > 2:295511/1‑121 (MQ=255) aTTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGt < 1:295511/121‑1 (MQ=255) ttGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAAGACCGGATGCGCGCGCGGAATGCCGATATGGGCGCGGCGCGGGCAGCGTGTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGgttgtt < 5:183233/149‑1 (MQ=255) gATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTc < 6:360215/148‑1 (MQ=255) tCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGAc < 4:318944/149‑1 (MQ=255) gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCTCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg < 8:171211/149‑1 (MQ=255) gAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACgg < 8:155415/149‑1 (MQ=255) | ACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGTGCTGTTGCTGGGCAGTGCCGAGGCGGCCAAGGCGATGCCCGCTGAACGCCCGGATGAGCCGATGGTGCTCAATGACAT‑TGTGCCGGGCGCGCCGTCGGCATTGATCGAGCGCCGCCCCGATATCCTCGCCGCCGAACACCGGCTGCGCGCGCGCAATGCCGATATCGGCGCGGCGCGGGCAGCGTTTTTCCCGCGTATCAGCCTGACCGGCAGCTTTGGTACCGCCAGTGCGCAGATGTCCGGGTTGTTCGACGG > NC_002947/3217916‑3218208 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |