New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522702 =	60 (1.080)	5 (0.100)	5/226	NT	11.6%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522789 =	23 (0.470)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase

AGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3522863‑3522702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGA  >  NC_002947/3522789‑3522872                                                                                                                                                                                                                                                        AGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGC                                                                                                   >  1:1285/1‑149  GGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGC                                                                                                   >  5:259487/1‑148   GTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCA                                                                                                 >  8:71688/1‑149      AGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGG                                                                                              <  6:328197/149‑1      AGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATG                                                                                               <  5:87094/148‑1           TTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTG                                                                                         >  7:264012/1‑149               AATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC                                                                                      >  5:71660/1‑148               AATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC                                                                                      <  6:71660/148‑1                                                                                      ATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGATCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTA              >  6:90154/1‑149                                                                                        GGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATG                                    >  1:52420/1‑125                                                                                        GGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATG                                    <  2:52420/125‑1                                                                                                        TGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCC                                       <  3:147808/105‑1                                                                                                        TGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCCG‑ATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCC                                       >  4:147808/1‑105                                                                                                                                                            CCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGA  >  3:53376/1‑91                                                                                                                                                            CCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGA  <  4:53376/91‑1                                                                                                                                                                                                                                                        AGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACGAGCCAATGCCAGGCCTGTTGCGCCTGCTGGAGCATGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3522863‑3522702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGA  >  NC_002947/3522789‑3522872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.