New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522702 =	60 (1.080)	5 (0.100)	5/226	NT	11.6%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522789 =	23 (0.470)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase

GCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGA  >  NC_002947/3522641‑3522913                                                                                                                                                      |                                                                                                                             gCAGCGGGGCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCTCC‑ACGCACATGCCGATGCCATGGGCCTGGGCa                                                                                                                              <  1:37803/149‑1 (MQ=255)    gCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGc                                                                                                                           <  7:80229/149‑1 (MQ=255)      gggTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCCAGGCCCATGGCATCGGCATgtgc                                                                                                                         <  7:190929/149‑4 (MQ=255)       ggTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCCAGGCCCATGGCATCGGCATgtgcg                                                                                                                        <  1:258173/149‑5 (MQ=255)                                  cGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGc                                                                                             >  5:215589/1‑149 (MQ=255)                                    gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTc                                                                                           <  1:250457/149‑1 (MQ=255)                                       accaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGt                                                                                         >  5:362077/1‑148 (MQ=255)                                                tGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCa                                                                               >  6:259487/1‑149 (MQ=255)                                                    cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTAGGCGTTAAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCTCTCCATGaa                                                                           >  8:8814/1‑149 (MQ=255)                                                              GCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAtt                                                                  <  6:71660‑M1/148‑1 (MQ=255)                                                              GCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAtt                                                                  >  5:71660‑M1/1‑148 (MQ=255)                                                                 CAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCaaa                                                              >  7:264012‑M1/1‑149 (MQ=255)                                                                      CCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCt                                                         <  6:328197‑M1/149‑1 (MQ=255)                                                                       CATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCt                                                         <  5:87094‑M1/148‑1 (MQ=255)                                                                         atggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGATCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTa                                                       >  6:90154‑M2/78‑149 (MQ=255)                                                                         TGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                      >  8:71688‑M1/1‑149 (MQ=255)                                                                           ggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATg                                                                             >  1:52420‑M2/76‑125 (MQ=255)                                                                           ggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATg                                                                             <  2:52420‑M2/50‑1 (MQ=255)                                                                           GCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAcc                                                     >  5:259487‑M1/1‑148 (MQ=255)                                                                           GCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCt                                                    >  1:1285‑M1/1‑149 (MQ=255)                                                                                   cATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATcccc                                             >  2:144415/1‑148 (MQ=255)                                                                                     tgtgCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGAGCTCCATGAACACCACATTCAAAGCGCTATCCTGATCCCCGAt                                          >  6:231237/1‑149 (MQ=255)                                                                                         cTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtg                                      >  1:132102/1‑149 (MQ=255)                                                                                          tCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAt                                                                   <  3:275430/119‑1 (MQ=255)                                                                                          tCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAt                                                                   >  4:275430/1‑119 (MQ=255)                                                                                           cGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgtg                                    >  1:283348/1‑149 (MQ=255)                                                                                            tggtgaccaacgcaccgcggctgaacgccgagcacatgccgatgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTcc                                                                                >  4:147808‑M2/59‑105 (MQ=255)                                                                                            tggtgaccaacgcaccgcggctgaacgccgagcacatgccgatgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTcc                                                                                <  3:147808‑M2/47‑1 (MQ=255)                                                                                            ggCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGc                                   <  6:87094/149‑1 (MQ=255)                                                                                                ttCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCaaa                                                              >  2:45232/1‑118 (MQ=255)                                                                                                ttCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCaaa                                                              <  1:45232/118‑1 (MQ=255)                                                                                                      cgcgGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtttc                         <  5:328197/149‑1 (MQ=255)                                                                                                         ggTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCCAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtttcttt                      <  6:279412/149‑1 (MQ=255)                                                                                                           tGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct                    <  2:132102/149‑1 (MQ=255)                                                                                                             cGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTg                   <  3:161774/148‑1 (MQ=255)                                                                                                               gtGGTGACCAACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTg                   >  7:88258/2‑147 (MQ=255)                                                                                                                       c‑acGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtt                           >  6:70197/1‑130 (MQ=255)                                                                                                                       c‑acGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAtt                           <  5:70197/130‑1 (MQ=255)                                                                                                                             acaTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGACTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCat    >  1:259095/1‑148 (MQ=255)                                                                                                                              caTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatga  <  1:144415/149‑1 (MQ=255)                                                                                                                                               cctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGa                                           <  4:53376‑M2/84‑1 (MQ=255)                                                                                                                                               cctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGa                                           >  3:53376‑M2/8‑91 (MQ=255)                                                                                                                                                      |                                                                                                                             GCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACC‑ACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGA  >  NC_002947/3522641‑3522913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.