| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3539531 | 49 (0.880) | 4 (0.080) | 4/236 | NT | 7.9% | coding (218/1539 nt) | PP_3127 | exopolysaccharide transport protein |
| ? | NC_002947 | = 3539584 | 48 (0.940) | coding (271/1539 nt) | PP_3127 | exopolysaccharide transport protein | |||||
GTGTTAGGGGTGAGTGCCGCAGTCATTCTCGCCGCGACCGTGGCCGTCGCGTTGATGGTGCCGCCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3539377‑3539531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgatgaTGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTGGTCGACACCAGCTCAGGCGAAATCTGCTGCGACTCCACCAGAATGGTGCCGGTCGACTGGTAGATCGG < NC_002947/3539584‑3539440 GTGTTAGGGGTGAGTGCCGCAGGCATTCTCGCCGCGACCGTGGCCGTCGCGTTGATGGTGCCGCCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTT < 7:61353/147‑1 GGGGTGAGTGCCGCAGTCATTCTCGCCGCGACCGTGGCCGTCGCGTTGATGGTGCCGCCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGAT > 6:326795/1‑147 TGGCCGTCGCGTTGATGGTGCCGCCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTT > 3:116226/1‑148 CCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGG < 4:116226/144‑1 TTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCT > 1:229310/1‑99 TTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCT < 2:229310/99‑1 TTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTG < 5:331818/87‑1 TTGCCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTG > 6:331818/1‑87 CCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTGGTCGACACCAGCTCAGGCGAAATCTGCTGCGACTCCACCAGAATGGTGCCGGTCGACTGGTAGAT < 8:277371/149‑1 CCGATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTGGTCGACACCAGCTCAGGCGAAATCTGCTGCGACTCCACCAGAATGGTGCCGGTCGACTGG > 5:232043/1‑144 ATGATGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTGGTCGACACCAGCTCAGGCGAAATCTGCTGCGACTCCACCAGAATGGTGCCGGTCGACTGGTAGATCGG < 6:232043/149‑1 GTGTTAGGGGTGAGTGCCGCAGTCATTCTCGCCGCGACCGTGGCCGTCGCGTTGATGGTGCCGCCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3539377‑3539531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgatgaTGCGCAGCAGGTTGTCGCGGGTCATCACCCGTTGACGGATCACCTCGATGCGCTCATCGGCAAAGCTGGTGTTGTTGGTCGACACCAGCTCAGGCGAAATCTGCTGCGACTCCACCAGAATGGTGCCGGTCGACTGGTAGATCGG < NC_002947/3539584‑3539440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |