New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3539531	49 (0.880)	4 (0.080)	4/236	NT	7.9%	coding (218/1539 nt)	PP_3127	exopolysaccharide transport protein
	?	NC_002947	= 3539584	48 (0.940)					coding (271/1539 nt)	PP_3127	exopolysaccharide transport protein

CCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGTTCAATGTCTCGTTCGA  >  NC_002947/3539440‑3539732                                                                                                                                                 |                                                                                                                                                     ccgATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcat                                                                                                                                                  <  6:232043‑M2/149‑5 (MQ=255)    aTCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcgg                                                                                                                                               <  8:277371‑M2/149‑8 (MQ=255)         ccAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcgg                                                                                                                                               >  5:232043‑M2/1‑137 (MQ=255)            gTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTAc                                                                                                                                        >  6:319464/1‑148 (MQ=255)             tCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGa                                                                                                                                      >  6:241020/1‑149 (MQ=255)             tCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGa                                                                                                                                      >  8:127568/1‑149 (MQ=255)              cGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGAc                                                                                                                                     <  3:207994/149‑1 (MQ=255)               gACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGAc                                                                                                                                     <  5:241020/148‑1 (MQ=255)                  cGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACctct                                                                                                                                 >  5:165988/1‑149 (MQ=255)                     cACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGAc                                                                                                                                     <  4:103976/142‑1 (MQ=255)                     cACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGAc                                                                                                                                     >  3:103976/1‑142 (MQ=255)                     cACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCg                                                                                                                              >  3:47041/1‑149 (MQ=255)                                  gAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCtt                                                                                                                 >  3:212876/1‑149 (MQ=255)                                  gAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCtt                                                                                                                 <  4:113420/149‑1 (MQ=255)                                    gTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCa                                                                                                               <  6:16724/149‑1 (MQ=255)                                    gTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCa                                                                                                               <  4:212876/149‑1 (MQ=255)                                    gTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCa                                                                                                               <  4:47041/149‑1 (MQ=255)                                     tCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAg                                                                                                              >  6:326945/1‑149 (MQ=255)                                          gcagATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGaaa                                                                                                         <  5:319464/149‑1 (MQ=255)                                             gATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGc                                                                                                       >  1:257894/1‑148 (MQ=255)                                                ttCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGAc                                                                                                    >  5:353404/1‑148 (MQ=255)                                                  cGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACaa                                                                                                  <  6:165988/148‑1 (MQ=255)                                                   gCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGAc                                                                                                    >  1:9304/1‑145 (MQ=255)                                                             gtgtCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGAt                                                                                      >  3:292358/1‑149 (MQ=255)                                                                tCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATgc                                                                                    <  7:277371/148‑1 (MQ=255)                                                                  gACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATgcgc                                                                                  >  1:179509/1‑148 (MQ=255)                                                                     caacaaCACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaa                                                                                                                                            >  6:331818‑M2/1‑77 (MQ=255)                                                                     caacaaCACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaa                                                                                                                                            <  5:331818‑M2/87‑11 (MQ=255)                                                                       acaacaCCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGa                                                                                                           <  6:245709/118‑1 (MQ=255)                                                                       acaacaCCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGa                                                                                                           >  5:245709/1‑118 (MQ=255)                                                                            acCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATc                                                                                              >  4:336611/1‑126 (MQ=255)                                                                            acCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATc                                                                                              <  3:336611/126‑1 (MQ=255)                                                                                   ttGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTc                                                                                                                <  6:295386/101‑1 (MQ=255)                                                                                   ttGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTc                                                                                                                >  5:295386/1‑101 (MQ=255)                                                                                      ccGATGAGCGCATCGAGGTGATCCTTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAAc                                                              <  6:353404/148‑1 (MQ=255)                                                                                      ccGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaaagctggtgttgttggtcgacaccagctcaggcgaaatctgctgcgactccaccagaatggtgccggtcgactgg                                                                  <  4:116226‑M2/144‑85 (MQ=255)                                                                                            aGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaaagctggtgttgttggtcgacaccagctcaggcgaa                                                                                                         >  1:229310‑M2/1‑54 (MQ=255)                                                                                            aGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaaagctggtgttgttggtcgacaccagctcaggcgaa                                                                                                         <  2:229310‑M2/99‑46 (MQ=255)                                                                                             gcgcATCGAGGTGGTCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGt                                                                    <  8:327021/135‑1 (MQ=255)                                                                                             gcgcATCGAGGTGGTCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGt                                                                    >  7:327021/1‑135 (MQ=255)                                                                                                   cGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACg                                                >  6:256244/1‑149 (MQ=255)                                                                                                       gTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTgcg                                            <  7:127568/149‑1 (MQ=255)                                                                                                         gATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGcgcg                                          >  6:244521/1‑149 (MQ=255)                                                                                                           tCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGc                                        >  5:22086/1‑149 (MQ=255)                                                                                                             cGTCAACGGGTGTTGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGcc                                       <  3:8043/148‑1 (MQ=255)                                                                                                               tCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCgtg                                    <  5:256244/149‑1 (MQ=255)                                                                                                               tCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCgtg                                    <  2:9304/149‑1 (MQ=255)                                                                                                                 aaCGGGTGATGACCCGCGACAACCTGCTGCGCAtcatcggcaaagctggtgttgttggtcgacaccagctcaggcgaaatctgctgcgactccaccagaatggtgccggtcgactggtagatcggcggcaccatcaacgcgacggcca                                   >  3:116226‑M2/1‑33 (MQ=255)                                                                                                                 aaCGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCgtgg                                   <  2:257894/148‑1 (MQ=255)                                                                                                                    gggTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGaa                               <  5:244521/149‑1 (MQ=255)                                                                                                                       tgatgaCCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGc                             <  6:241151/148‑1 (MQ=255)                                                                                                                       tgatgaCCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGc                             >  5:241151/1‑148 (MQ=255)                                                                                                                            aCCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGt                       >  5:38604/1‑149 (MQ=255)                                                                                                                              ccGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTgg                     >  7:285358/1‑149 (MQ=255)                                                                                                                                   aCAACCTGCTGCGCATCATCGGCAAGTACGTCCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGtt                 >  1:29544/1‑148 (MQ=255)                                                                                                                                   aCAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGaccacc                                                    <  6:136939/113‑1 (MQ=255)                                                                                                                                   aCAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGaccacc                                                    >  5:136939/1‑113 (MQ=255)                                                                                                                                         tgctgcGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGTTCAATGtc          >  1:292230/1‑149 (MQ=255)                                                                                                                                              cgcATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGTTCAATGTCTCGtt     >  3:347592/1‑149 (MQ=255)                                                                                                                                                catcatCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCg                                                                                                            <  5:261405/44‑1 (MQ=255)                                                                                                                                                catcatCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCg                                                                                                            >  6:261405/1‑44 (MQ=255)                                                                                                                                                 atcatcGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGTTCAATGTCTCGTTCGa  <  8:285358/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCGATCTACCAGTCGACCGGCACCATTCTGGTGGAGTCGCAGCAGATTTCGCCTGAGCTGGTGTCGACCAACAACACCAGCTTTGCCGATGAGCGCATCGAGGTGATCCGTCAACGGGTGATGACCCGCGACAACCTGCTGCGCATCATCGGCAAGTACGACCTCTTCGCCGACAAGCGCTTCAGCGAAAGCGACAAGATCGACCAGATGCGCAACGCGATCGTGGTCGAAACCCTGACCACCTACGTGCGCGGCCGTGGTGAAGCGACCGTGGCGTTCAATGTCTCGTTCGA  >  NC_002947/3539440‑3539732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.