New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3648046 =	32 (0.580)	3 (0.060)	3/246	NT	8.9%	coding (330/807 nt)	PP_3214	hypothetical protein
	?	NC_002947	3648078 =	31 (0.580)					coding (362/807 nt)	PP_3214	hypothetical protein

AGGTGGCAGCGATCAACACATCCTTGACGATGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3648080‑3648046 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCA  >  NC_002947/3648078‑3648222                                                                                                                                                                                       AGGTGGCAGCGATCAACACATCCTTGACGATGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATG                                 >  2:330737/1‑149     GGCAGCGATCAACACATCCTTGACGATGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATT                                                                           <  5:198075/104‑1     GGCAGCGATCAACACATCCTTGACGATGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATT                                                                           >  6:198075/1‑104                                 CCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTACCCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCA  <  1:74580/149‑1                                   ACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGAT                                  <  5:63041/114‑1                                   ACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGAT                                  >  6:63041/1‑114                                                                                                                                                                                       AGGTGGCAGCGATCAACACATCCTTGACGATGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3648080‑3648046 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCA  >  NC_002947/3648078‑3648222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.