New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3648046 =	32 (0.580)	3 (0.060)	3/246	NT	8.9%	coding (330/807 nt)	PP_3214	hypothetical protein
	?	NC_002947	3648078 =	31 (0.580)					coding (362/807 nt)	PP_3214	hypothetical protein

GTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCA  >  NC_002947/3647932‑3648222                                                                                                                                                   |                                                                                                                                                  catcgggcttgcggtagtaagtgttcagtgaaaaacgatcaaatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggTGGCATCGTCAAGGATGTGTTGATCGCTGCCACCt                                                                                                                                                 >  2:330737‑M1/115‑149 (MQ=255)     gtcgATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTAt                                                                                                                                               >  4:257509/1‑147 (MQ=255)     gtcgATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATg                                                                                                                                              <  5:80681/148‑1 (MQ=255)             cAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCATGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTg                                                                                                                                        >  1:113223/1‑146 (MQ=255)                   gTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAggg                                                                                                                                <  3:257509/148‑1 (MQ=255)                   gTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGgc                                                                                                                               >  5:352646/1‑149 (MQ=255)                       aaCGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGAGCaa                                                                                                                           >  2:155979/1‑149 (MQ=255)                                  cGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATTTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTAc                                                                                                                 <  2:113223/148‑1 (MQ=255)                                  cGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTAc                                                                                                                 <  4:308695/148‑1 (MQ=255)                                      aaCGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCCCAATCGAAAGTACCTGCt                                                                                                            >  2:25571/1‑149 (MQ=255)                                       aCGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCtt                                                                                                           <  7:235746/149‑1 (MQ=255)                                          aTGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTggg                                                                                                        >  3:183894/1‑149 (MQ=255)                                               tACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATCTGTTGATCGCTGACAACTATGAAACTTGAAAAATACTCAATCGAAAGTACCTGCTTGGGCCCGc                                                                                                   >  2:15301/1‑149 (MQ=255)                                                    cTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCGTGGGCCCGCTGtt                                                                                               >  7:266951/1‑148 (MQ=255)                                                       ttACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCCTGGGCCCGCTGTTGAc                                                                                            <  8:266951/148‑1 (MQ=255)                                                         aCGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCt                                                                                          <  6:352646/148‑1 (MQ=255)                                                                gTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAAcctgc                                                                                  <  6:63937/149‑1 (MQ=255)                                                                 ttttCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAAcctgcc                                                                                 >  2:74580/1‑149 (MQ=255)                                                                        cgcgACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGAttt                                                                          <  1:15301/149‑1 (MQ=255)                                                                                   cTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTc                                                               <  4:183894/149‑1 (MQ=255)                                                                                           gATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCAc                                                             <  1:338676/143‑1 (MQ=255)                                                                                           gATCAGTGGCCACCGTCACAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCAc                                                             >  2:338676/1‑143 (MQ=255)                                                                                                gTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTtac                                                  <  1:25571/149‑1 (MQ=255)                                                                                                       ccGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTCAACACTTACTA‑CCGc                                           >  1:263115/1‑148 (MQ=255)                                                                                                        cGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCaa                                         <  1:155979/149‑1 (MQ=255)                                                                                                                aggtggcagcgatcaacacatccttgacgatgccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATg                                 >  2:330737‑M2/36‑149 (MQ=255)                                                                                                                    ggcagcgatcaacacatccttgacgatgccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGAtt                                                                           <  5:198075‑M2/73‑1 (MQ=255)                                                                                                                    ggcagcgatcaacacatccttgacgatgccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGAtt                                                                           >  6:198075‑M2/32‑104 (MQ=255)                                                                                                                                   gtgtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTc              >  6:240732/1‑149 (MQ=255)                                                                                                                                    tgtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTc              <  5:240732/148‑1 (MQ=255)                                                                                                                                    tgtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTc              <  5:41916/148‑1 (MQ=255)                                                                                                                                     gtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCAc                          >  2:179312/1‑135 (MQ=255)                                                                                                                                     gtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCt             <  8:8680/148‑1 (MQ=255)                                                                                                                                     gtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCt             >  7:8680/1‑148 (MQ=255)                                                                                                                                     gtTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCt             <  2:263115/148‑1 (MQ=255)                                                                                                                                      ttGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTg            >  6:217599/1‑148 (MQ=255)                                                                                                                                                ccaCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTACCCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCa  <  1:74580‑M2/146‑1 (MQ=255)                                                                                                                                                  aCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGAt                                  >  6:63041‑M2/2‑114 (MQ=255)                                                                                                                                                  aCCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGAt                                  <  5:63041‑M2/113‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTA‑CCGCAAGCCCGATGGGATCACCGGTAAAGCGTCTGGACAGTGGCA  >  NC_002947/3647932‑3648222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.