| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3648046 = | 32 (0.580) | 3 (0.060) | 3/246 | NT | 8.9% | coding (330/807 nt) | PP_3214 | hypothetical protein |
| ? | NC_002947 | 3648078 = | 31 (0.580) | coding (362/807 nt) | PP_3214 | hypothetical protein | |||||
CGCCAGTGGCTGGACGTGGGGCGACATGTTCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTACCGCAA > NC_002947/3647899‑3648183 | cGCCAGTGGCTGGACGTGGGGCGACATGTTCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATg < 3:259530/149‑1 (MQ=255) tgccactgtccagacgctttaccggtgatcccatcgggcttgcgggtagtaagtgttcagtgaaaaacgatcaaatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggTgg < 1:74580‑M1/3‑1 (MQ=255) gTGGGGCGACATGTTCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGAtg > 3:308695/1‑149 (MQ=255) tggCGAAATGTTCCTGTTCGTCGATAACAAGTGGTACAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGTCGAGTTTTCACCTCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGAtgtg < 6:319353/147‑1 (MQ=255) gggCGACATGTTCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCCTCTCAGCTATGGCATCGTCAAGGAtgtg < 1:200187/148‑1 (MQ=255) ttCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGc > 5:63937/1‑149 (MQ=255) ttCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGc > 8:235746/1‑149 (MQ=255) tCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCCTCGTCAAGGATGTGTTGAGCGCTGc > 6:41916/1‑148 (MQ=255) catcgggcttgcggtagtaagtgttcagtgaaaaacgatcaaatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggTGGCATCGTCAAGGATGTGTTGATCGCTGCCACCt > 2:330737‑M1/115‑149 (MQ=255) atcgggcttgcggtagtaagtgttcagtgaaaaacgatcaaatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggt < 5:63041‑M1/1‑1 (MQ=255) atcgggcttgcggtagtaagtgttcagtgaaaaacgatcaaatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggt > 6:63041‑M1/114‑114 (MQ=255) gtcgATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTAt > 4:257509/1‑147 (MQ=255) gtcgATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATg < 5:80681/148‑1 (MQ=255) cAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCATGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTg > 1:113223/1‑146 (MQ=255) aaGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGAt < 2:192209/117‑1 (MQ=255) aaGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGAt > 1:192209/1‑117 (MQ=255) gTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAggg < 3:257509/148‑1 (MQ=255) gTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGgc > 5:352646/1‑149 (MQ=255) aaCGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGAGCaa > 2:155979/1‑149 (MQ=255) cGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATTTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTAc < 2:113223/148‑1 (MQ=255) cGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTAc < 4:308695/148‑1 (MQ=255) aaCGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCCCAATCGAAAGTACCTGCt > 2:25571/1‑149 (MQ=255) aCGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCtt < 7:235746/149‑1 (MQ=255) aatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggTGGCATCGTCAAGGATGTGTTGATCGCTGcc > 6:198075‑M1/74‑104 (MQ=255) aatccaggcaggttcaggtcaacagcgggcccaagcaggtactttcgattgcgcccttctccacgctcataggTGGCATCGTCAAGGATGTGTTGATCGCTGcc < 5:198075‑M1/31‑1 (MQ=255) aTGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTggg > 3:183894/1‑149 (MQ=255) tACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATCTGTTGATCGCTGACAACTATGAAACTTGAAAAATACTCAATCGAAAGTACCTGCTTGGGCCCGc > 2:15301/1‑149 (MQ=255) cTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCGTGGGCCCGCTGtt > 7:266951/1‑148 (MQ=255) ttACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCCTGGGCCCGCTGTTGAc < 8:266951/148‑1 (MQ=255) aCGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCt < 6:352646/148‑1 (MQ=255) gTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAAcctgc < 6:63937/149‑1 (MQ=255) ttttCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAAcctgcc > 2:74580/1‑149 (MQ=255) cgcgACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGAttt < 1:15301/149‑1 (MQ=255) cTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTc < 4:183894/149‑1 (MQ=255) gATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCAc < 1:338676/143‑1 (MQ=255) gATCAGTGGCCACCGTCACAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCAc > 2:338676/1‑143 (MQ=255) gTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTtac < 1:25571/149‑1 (MQ=255) ccGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTCAACACTTACTACCGc > 1:263115/1‑148 (MQ=255) cGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTACCGCaa < 1:155979/149‑1 (MQ=255) | CGCCAGTGGCTGGACGTGGGGCGACATGTTCCTGTTCGTCGATAACAAGTGGTCCAACGGCTTGTCCGGCAACGATGGCTACACCTATTACGGCGAGTTTTCACCGCGACTGTCGCTCGGCAAGATCAGTGGCCACCGTCTCAGCTATGGCATCGTCAAGGATGTGTTGATCGCTGCCACCTATGAGCGTGGAGAAGGGCGCAATCGAAAGTACCTGCTTGGGCCCGCTGTTGACCTGAACCTGCCTGGATTTGATCGTTTTTCACTGAACACTTACTACCGCAA > NC_002947/3647899‑3648183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |