New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3784185	10 (0.180)	12 (0.220)	12/256	NT	61.5%	coding (509/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3788848 =	5 (0.090)					intergenic (‑214/‑48)	PP_3350/atsA	hypothetical protein/arylsulfatase

ATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3784040‑3784185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCTGCTG  >  NC_002947/3788848‑3788994                                                                                                                                                                                                                                                                                                        ATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAG                                                                                                                                                   >  8:158483/1‑149               CCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAAT                                                                                                                                     >  2:27212/1‑149                               CTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAA                                                                                                                     <  5:193649/149‑1                                TTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGG                                                                                                                                                  >  6:263917/1‑119                                                     GCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATT                                                                                               <  6:174991/149‑1                                                       CTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGC                                                                                             <  3:230487/149‑1                                                                   CATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTT                                                                                <  7:158483/149‑1                                                                       CCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGC                                                                                                            >  5:85356/1‑118                                                                       CCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGC                                                                                                            <  6:85356/118‑1                                                                                                              AGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGG                                     <  1:27212/149‑1                                                                                                                         ATTGCCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCGCGCGGGGAGTTGGG‑TCCGCGCCCTTGCCGCCCGCGGCGGGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCCCCACCC                          >  2:335984/1‑149                                                                                                                             CCCGGGCGCTGGCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCA                                <  5:172533/139‑1                                                                                                                                        GCCGCCTCGCCGAGTCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAAC           <  1:332962/149‑1                                                                                                                                        GCCGCCTCGCCGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAA            <  5:346826/148‑1                                                                                                                                                GCCGATGCCATTCGCAAAAATCGAGTCCAATAAAAAAACAATAGCCCCCCCATGAATTTCCTTCAACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCT      <  1:289893/147‑1                                                                                                                                                 CCGAGGCCATGCGAAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCCCCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCTGCTG  <  2:235949/149‑1                                                                                                                                                                                                                                                                                                        ATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3784040‑3784185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACAAGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCTGCTG  >  NC_002947/3788848‑3788994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.