New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3784185	10 (0.180)	12 (0.220)	12/256	NT	61.5%	coding (509/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3788848 =	5 (0.090)					intergenic (‑214/‑48)	PP_3350/atsA	hypothetical protein/arylsulfatase

ACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTG  >  NC_002947/3784038‑3784332                                                                                                                                                     |                                                                                                                                                    aCATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCca                                                                                                                                                    <  4:133304/149‑1 (MQ=255)   aTGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgag                                                                                                                                                  >  8:158483‑M1/1‑146 (MQ=255)      gATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGc                                                                                                                                                >  1:277766/1‑149 (MQ=255)               gccCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCt                                                                                                                                      >  3:213462/1‑149 (MQ=255)                 ccGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaat                                                                                                                                    >  2:27212‑M1/1‑132 (MQ=255)                    gCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTcgac                                                                                                                                  >  3:183748/1‑148 (MQ=255)                             cACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGGCGAAGCGTTGt                                                                                                                        <  4:213462/149‑1 (MQ=255)                                ccTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGa                                                                                                                     <  4:183748/149‑1 (MQ=255)                                 cTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaa                                                                                                                    <  5:193649‑M1/149‑34 (MQ=255)                                  ttGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgagg                                                                                                                                                 >  6:263917‑M1/1‑115 (MQ=255)                                                     gggCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGc                                                                                                >  6:277451/1‑149 (MQ=255)                                                       gCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaatt                                                                                              <  6:174991‑M1/149‑56 (MQ=255)                                                         cTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgc                                                                                            <  3:230487‑M1/149‑58 (MQ=255)                                                                 ccGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTg                                                                                     <  2:277766/149‑1 (MQ=255)                                                                      cATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccaccccctt                                                                                <  7:158483‑M1/149‑70 (MQ=255)                                                                          cccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagc                                                                                                           <  6:85356‑M1/118‑43 (MQ=255)                                                                          cccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagc                                                                                                           >  5:85356‑M1/1‑76 (MQ=255)                                                                                    gCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTAc                                                                  >  7:171980/1‑149 (MQ=255)                                                                                                                 aGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccacccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatgg                                     <  1:27212‑M1/149‑113 (MQ=255)                                                                                                                        cAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATc                                  <  7:73137/145‑1 (MQ=255)                                                                                                                        cAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATc                                  >  8:73137/1‑145 (MQ=255)                                                                                                                            aTTGCCCGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagccgcgcggggagttgggtccgcgcccttgccgcccgcggcgggctcatgctcggtgccagccacgccatggccgccccaccc                          >  2:335984‑M1/1‑26 (MQ=255)                                                                                                                            aTTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGa                          <  8:171980/149‑1 (MQ=255)                                                                                                                                cccGGGCGCTGGCCGCCTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccacccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatggccgca                                <  5:172533‑M1/139‑118 (MQ=255)                                                                                                                                           gccgccTCGCCgagtccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccacccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatggccgcaccaaccgttaaacaaccaaac           <  1:332962‑M1/149‑139 (MQ=255)                                                                                                                                           gccgccTCGCCgaggccatgcgcaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccacccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatggccgcaccaaccgttaaacaaccaaa            <  5:346826‑M1/148‑138 (MQ=255)                                                                                                                                                   gCCgatgccattcgcaaaaatcgagtccaataaaaaaacaatagcccccccatgaatttccttcaacccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatggccgcaccaaccgttaaacaaccaaacattct     <  1:289893‑M1/147‑145 (MQ=255)                                                                                                                                                    ccgaggccatgcgaaaaattcgagtccattacaaaaacaagagcccccccatgaattgcctccccccccttgccgccctcggcgtgctcatgctcggtgccagccacgccatggccgcaccaaccgttaaacaaccaaacattctgctg  <  2:235949‑M1/149‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGC‑GCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCCTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTG  >  NC_002947/3784038‑3784332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.