| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3784185 | 10 (0.180) | 12 (0.220) | 12/256 | NT | 61.5% | coding (509/822 nt) | nikE | nickel ABC transporter ATP‑binding protein |
| ? | NC_002947 | 3788848 = | 5 (0.090) | intergenic (‑214/‑48) | PP_3350/atsA | hypothetical protein/arylsulfatase | |||||
TTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAGCGTTCGCTAATCGCACACTTCTGCAGCGAGCGGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCTGCTG > NC_002947/3788702‑3788994 | atggatgaagccgcccggcaggcgcgcacccttgcactgctggaggaaatgggcctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAg > 8:158483‑M2/147‑149 (MQ=255) ccggcaggcgcgcacccttgcactgctggaggaaatgggcctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAAt > 2:27212‑M2/133‑149 (MQ=255) cttgcactgctggaggaaatgggcctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACaaa < 5:193649‑M2/33‑1 (MQ=255) ttgcactgctggaggaaatgggcctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAgg > 6:263917‑M2/116‑119 (MQ=255) aaGGAATGATCAGCATCAAGCGTTCGCTAATCGCACACTTCTGCAGCGAGCGGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAACAACA‑atagggg > 8:41560/1‑146 (MQ=255) gcctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAAtt < 6:174991‑M2/55‑1 (MQ=255) ctgcgcgccgagcatgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGc < 3:230487‑M2/57‑1 (MQ=255) catgcccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCtt < 7:158483‑M2/69‑1 (MQ=255) cccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGc < 6:85356‑M2/42‑1 (MQ=255) cccaacgcctgccgcagcagttgagtggcggccagttgcagcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGc > 5:85356‑M2/77‑118 (MQ=255) acacTTCTGCAGCGAGCGGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACACAGAGCCCCCCCATGAATTGCC‑TCCAccc < 1:20835/137‑1 (MQ=255) agcgagcgGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGGCGCGCGATGAGTTGCG‑GCGGCCGCGTTGCCGCGCTCGGCGTGCTCa > 4:194452/1‑149 (MQ=255) gcgGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTc < 7:41560/149‑1 (MQ=255) atCCGTCCCTAGAATCCAGTGGCGTGCTGTCTATTCTTAGGCCATGAGCAAAATTCTAGTCCATTACAAAAACA‑CGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATgg < 6:259061/149‑1 (MQ=255) agcgtgccaacattgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATgg < 1:27212‑M2/112‑1 (MQ=255) attgcccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCGCGCGGGGAGTTGGG‑TCCGCGCCCTTGCCGCCCGCGGCGGGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCCCCAccc > 2:335984‑M2/27‑149 (MQ=255) cccgggcgctggccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCa < 5:172533‑M2/117‑1 (MQ=255) gccgcctcgccGAGTCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAAc < 1:332962‑M2/138‑1 (MQ=255) gccgcctcgccGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCaaa < 5:346826‑M2/137‑1 (MQ=255) gccGATGCCATTCGCAAAAATCGAGTCCAATAAAAAAACA‑ATAGCCCCCCCATGAATTTCCTTCAACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTct < 1:289893‑M2/144‑1 (MQ=255) ccGAGGCCATGCGAAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCCCCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTctgctg < 2:235949‑M2/147‑1 (MQ=255) agagGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTctgctg < 4:8399/148‑1 (MQ=255) | TTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAGCGTTCGCTAATCGCACACTTCTGCAGCGAGCGGCTGCGGCATTCATTCATCCGTCGCTAGAATCCAGTGGCGTGCTGTCTATTCAGAGGCCATGCGCAAAATTCGAGTCCATTACAAAAACA‑AGAGCCCCCCCATGAATTGCC‑TCCACCCCCTTGCCGCCCTCGGCGTGCTCATGCTCGGTGCCAGCCACGCCATGGCCGCACCAACCGTTAAACAACCAAACATTCTGCTG > NC_002947/3788702‑3788994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |