New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3940056 =	63 (1.140)	4 (0.080)	3/242	NT	6.2%	coding (219/414 nt)	csgF	curli secretion/assembly outer membrane associated protein
	?	NC_002947	3940101 =	61 (1.170)					coding (174/414 nt)	csgF	curli secretion/assembly outer membrane associated protein

CACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3940209‑3940056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgagGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCG  >  NC_002947/3940101‑3940245                                                                                                                                                                                                                                                                                                             CACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCC                                                                                                                                                        >  3:253215/1‑149  ACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCT                                                                                                                                                       <  2:208198/149‑1  ACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCT                                                                                                                                                       <  7:252047/149‑1   CCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCGGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTT                                                                                                                                                      <  1:349300/149‑1     GAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGA                                                                                                                                                    <  5:334279/149‑1                                                                                                              CTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCT                                           >  5:157828/1‑149                                                                                                               TCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGT                                                      <  1:190283/137‑1                                                                                                               TCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGT                                                      >  2:190283/1‑137                                                                                                                          GCCTCGGCCTTTACTGG‑‑‑CACGGTCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAG                            >  7:318398/1‑149                                                                                                                                                       TGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCG  >  4:137193/1‑149                                                                                                                                                        GAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGC   <  8:252047/147‑1                                                                                                                                                         AGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCG                                                                   >  7:23240/1‑82                                                                                                                                                         AGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCG                                                                   <  8:23240/82‑1                                                                                                                                                                                                                                                                                                             CACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3940209‑3940056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgagGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCG  >  NC_002947/3940101‑3940245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.