New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4019985 =	49 (0.880)	3 (0.060)	3/248	NT	6.4%	coding (696/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4020035 =	41 (0.760)					coding (746/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

TGAACTGCTCGCCTGCCAGGGCGCGCTGCCACATCGGCAGAATAGGCGTCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4020043‑4019985 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  NC_002947/4020035‑4020181                                                                                                                                                                                                                TGAACTGCTCGCCTGCCAGGGCGCGCTGCCACATCGGCAGAATAGGCGTCTGGCCGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCACGACCCCAAAGGC                                                            >  6:158806/1‑148            CCTGCCAGGGCGCGCTGCCACATCGGCAGAATAGGCGTCTGGCCGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGC                                                >  1:164754/1‑149            CCTGCCAGGGCGCGCTGCCACATCGGCAGAATAGGCGTCTGGCCGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGC                                                <  2:164754/149‑1                                                         GCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAG   <  4:289694/149‑1                                                          CGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  <  1:163285/149‑1                                                           GAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  3:167409/1‑148                                                           GAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  7:305708/1‑148                                                                                                                                                                                                                TGAACTGCTCGCCTGCCAGGGCGCGCTGCCACATCGGCAGAATAGGCGTCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4020043‑4019985 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  NC_002947/4020035‑4020181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.