New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4019985 =	49 (0.880)	3 (0.060)	3/248	NT	6.4%	coding (696/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4020035 =	41 (0.760)					coding (746/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

ATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTA  >  NC_002947/4019840‑4020129                                                                                                                                                    |                                                                                                                                                 cctgctcctgcactcgctcactgatgtcataggcgaacagaaacgcgccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctc                                                                                                                                                  >  7:305708‑M1/148‑148 (MQ=255) cctgctcctgcactcgctcactgatgtcataggcgaacagaaacgcgccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctc                                                                                                                                                  >  3:167409‑M1/148‑148 (MQ=255) cctgctcctgcactcgctcactgatgtcataggcgaacagaaacgcgccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCg                                                                                                                                                 <  1:163285‑M1/2‑1 (MQ=255)  ctgctcctgcactcgctcactgatgtcataggcgaacagaaacgcgccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCGc                                                                                                                                                <  4:289694‑M1/3‑1 (MQ=255)   cATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCgg                                                                                                                                             >  1:19320/1‑149 (MQ=255)            gTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGcc                                                                                                                                    >  3:285127/1‑149 (MQ=255)            gTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGc                                                                                                                                     <  1:262071/148‑1 (MQ=255)                       tgtgGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGAGTGGACCCCCGAAAACGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTATGcc                                                                                                                           >  1:290758/1‑148 (MQ=255)                              gACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGAc                                                                                                                                       >  8:197032/1‑128 (MQ=255)                              gACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGAc                                                                                                                                       <  7:197032/128‑1 (MQ=255)                              gACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTgg                                                                                                                    >  3:289694/1‑147 (MQ=255)                                    gACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGAt                                                                                                                        >  3:261002/1‑137 (MQ=255)                                    gACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGAt                                                                                                                        <  4:261002/137‑1 (MQ=255)                                    gACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAgcgcgc                                                                                                            >  8:87866/1‑149 (MQ=255)                                       cTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTa                                                                                                                                  >  7:183399/1‑124 (MQ=255)                                       cTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTa                                                                                                                                  <  8:183399/124‑1 (MQ=255)                                       cTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCt                                                                                                         <  4:285127/149‑1 (MQ=255)                                         gcgcTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTgg                                                                                                       >  2:283675/1‑149 (MQ=255)                                           gctggctgGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCa                                                                                                     <  7:87866/149‑1 (MQ=255)                                               gccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAgg                                                                                                   <  2:164754‑M1/48‑1 (MQ=255)                                               gccctgtacctcgcctttggggtcgcgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAgg                                                                                                   >  1:164754‑M1/102‑149 (MQ=255)                                                ctggcGGTCAATCGCCAGGCCAGGCATGACTTCCACCAGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCGGGCGa                                                                                                <  2:349893/149‑1 (MQ=255)                                                     ggTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑CGGTAGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGt                                                                                           >  4:172858/1‑149 (MQ=255)                                                           tCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATc                                                                                      >  3:212347/1‑148 (MQ=255)                                                           gcctttggggtcgtgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                        >  6:158806‑M1/90‑148 (MQ=255)                                                              ccaggccaggCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGAc                                                                                                                                       <  4:24494/96‑1 (MQ=255)                                                              ccaggccaggCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGAc                                                                                                                                       >  3:24494/1‑96 (MQ=255)                                                              ccaggccaggCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATc                                                                                      >  3:143078/1‑145 (MQ=255)                                                                 ggccaggcATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCg                                                                               <  4:327215/149‑1 (MQ=255)                                                                   ccaggcATGACTTCCAACTGATATACTG‑GAGGAAACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCAAGACTAATATTCTGACTATTTGTCAGAGAACCCTGGCATGCGAGCAGTTCATc                                                                                      >  7:158124/1‑140 (MQ=255)                                                                         aTGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTc                                                                       <  4:212347/149‑1 (MQ=255)                                                                          tGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCg                                                                      <  4:140666/149‑1 (MQ=255)                                                                            aCTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCgg                                                                     <  2:290758/148‑1 (MQ=255)                                                                              ttCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCCGGGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGc                                                                    >  1:268615/1‑148 (MQ=255)                                                                              ttCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGc                                                                    >  1:304588/1‑147 (MQ=255)                                                                                 cACCTGCTATACTG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGc                                                                <  4:143078/148‑1 (MQ=255)                                                                                  aCCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCg                                                                                                 <  7:184915/114‑1 (MQ=255)                                                                                  aCCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCg                                                                                                 >  8:184915/1‑114 (MQ=255)                                                                                      gCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCcg                                                          >  1:120607/1‑149 (MQ=255)                                                                                          taCGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCcgcg                                                        <  2:268615/147‑1 (MQ=255)                                                                                             gg‑gAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                        >  2:64563/1‑112 (MQ=255)                                                                                             gg‑gAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                        <  1:64563/112‑1 (MQ=255)                                                                                                   gaCACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCAtt                                              <  2:120607/149‑1 (MQ=255)                                                                                                      acCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTAt                                            >  2:163285/1‑148 (MQ=255)                                                                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCt                                                                         >  7:92683/1‑117 (MQ=255)                                                                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCt                                                                         <  8:92683/117‑1 (MQ=255)                                                                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCg                                                   <  1:271042/139‑1 (MQ=255)                                                                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCg                                                   >  2:271042/1‑139 (MQ=255)                                                                                                              tCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTgcgc                                   >  8:198675/1‑149 (MQ=255)                                                                                                                 gCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTc                                <  1:283675/149‑1 (MQ=255)                                                                                                                        ccTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGcc                          <  2:304588/148‑1 (MQ=255)                                                                                                                         cTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTAGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCtt                        >  1:259915/1‑149 (MQ=255)                                                                                                                             cc‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTgcgc                    <  7:198675/149‑1 (MQ=255)                                                                                                                                gggTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTAGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGa                  <  2:259915/149‑1 (MQ=255)                                                                                                                                 ggTTGGTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGAc                 <  4:209729/149‑1 (MQ=255)                                                                                                                                         gAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGc                                                                                              >  4:231175/1‑64 (MQ=255)                                                                                                                                               ggCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAgg    >  7:116511/1‑148 (MQ=255)                                                                                                                                                gCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTa  <  8:116511/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG‑GAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTA  >  NC_002947/4019840‑4020129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.