New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4019985 =	49 (0.880)	3 (0.060)	3/248	NT	6.4%	coding (696/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4020035 =	41 (0.760)					coding (746/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

CTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  NC_002947/4019887‑4020181                                                                                                                                                      |                                                                                                                                                   ctggcGGTCAATCGCCAGGCCAGGCATGACTTCCACCAGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCGGGCGa                                                                                                                                                    <  2:349893/149‑1 (MQ=255)      ggTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑CGGTAGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGt                                                                                                                                               >  4:172858/1‑149 (MQ=255)           gcctttggggtcgtgcaaggcattgaagcgcaactcataatgacgcaccgcggggggcttgccgaaggtgccgatctcgatgaactgctCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                                                                            >  6:158806‑M1/90‑148 (MQ=255)            tCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATc                                                                                                                                          >  3:212347/1‑148 (MQ=255)               ccaggccaggCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATc                                                                                                                                          >  3:143078/1‑145 (MQ=255)                  ggccaggcATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCg                                                                                                                                   <  4:327215/149‑1 (MQ=255)                    ccaggcATGACTTCCAACTGATATACTGGAGGAAACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCAAGACTAATATTCTGACTATTTGTCAGAGAACCCTGGCATGCGAGCAGTTCATc                                                                                                                                          >  7:158124/1‑140 (MQ=255)                          aTGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTc                                                                                                                           <  4:212347/149‑1 (MQ=255)                           tGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCg                                                                                                                          <  4:140666/149‑1 (MQ=255)                             aCTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCgg                                                                                                                         <  2:290758/148‑1 (MQ=255)                               ttCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGc                                                                                                                        >  1:268615/1‑148 (MQ=255)                               ttCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGc                                                                                                                        >  1:304588/1‑147 (MQ=255)                                  cACCTGCTATACTGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGc                                                                                                                    <  4:143078/148‑1 (MQ=255)                                       gCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCcg                                                                                                              >  1:120607/1‑149 (MQ=255)                                           taCGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCcgcg                                                                                                            <  2:268615/147‑1 (MQ=255)                                              gggAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                                                                            <  1:64563/112‑1 (MQ=255)                                              gggAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCa                                                                                                                                            >  2:64563/1‑112 (MQ=255)                                                   gaCACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCAtt                                                                                                  <  2:120607/149‑1 (MQ=255)                                                      acCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTAt                                                                                                >  2:163285/1‑148 (MQ=255)                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCt                                                                                                                             >  7:92683/1‑117 (MQ=255)                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCt                                                                                                                             <  8:92683/117‑1 (MQ=255)                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCg                                                                                                       <  1:271042/139‑1 (MQ=255)                                                        ccGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCg                                                                                                       >  2:271042/1‑139 (MQ=255)                                                              tCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTgcgc                                                                                       >  8:198675/1‑149 (MQ=255)                                                                 gCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTc                                                                                    <  1:283675/149‑1 (MQ=255)                                                                        ccTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGcc                                                                              <  2:304588/148‑1 (MQ=255)                                                                         cTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTAGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCtt                                                                            >  1:259915/1‑149 (MQ=255)                                                                             cc‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTgcgc                                                                        <  7:198675/149‑1 (MQ=255)                                                                                gggTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTAGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGa                                                                      <  2:259915/149‑1 (MQ=255)                                                                                 ggTTGGTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGAc                                                                     <  4:209729/149‑1 (MQ=255)                                                                                         gAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGc                                                                                                                                                  >  4:231175/1‑64 (MQ=255)                                                                                           tgaactgctcgcctgccagggcgcgctgccacatcggcagaataggcgtctggccggcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCACGACCCCAAAGGc                                                            >  6:158806‑M2/60‑148 (MQ=255)                                                                                               ggCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAgg                                                        >  7:116511/1‑148 (MQ=255)                                                                                                gCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTa                                                      <  8:116511/149‑1 (MQ=255)                                                                                                      cctgccagggcgcgctgccacatcggcagaataggcgtctggccggcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGgc                                                <  2:164754‑M2/101‑1 (MQ=255)                                                                                                      cctgccagggcgcgctgccacatcggcagaataggcgtctggccggcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGgc                                                >  1:164754‑M2/49‑149 (MQ=255)                                                                                                              aCGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCtt                                                                            <  8:210156/113‑1 (MQ=255)                                                                                                              aCGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCtt                                                                            >  7:210156/1‑113 (MQ=255)                                                                                                                  cTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTAt                                                                                                <  3:54078/89‑1 (MQ=255)                                                                                                                  cTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTAt                                                                                                >  4:54078/1‑89 (MQ=255)                                                                                                                    aTTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAG‑CCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGcc                                 >  3:252016/1‑149 (MQ=255)                                                                                                                        tGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTAt                              >  8:336871/1‑149 (MQ=255)                                                                                                                            gATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACa                          >  3:151790/1‑149 (MQ=255)                                                                                                                               gtgGCAGCGCGCCCTGGCAGCCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGCCCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCGATGActt                         >  8:84403/1‑145 (MQ=255)                                                                                                                                tgGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCa                       <  7:331133/148‑1 (MQ=255)                                                                                                                                tgGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCa                       <  4:151790/148‑1 (MQ=255)                                                                                                                                        cgcCCTGGCAGGCGAGCAGTGCATCGAGATCGGCACCTTCGGCAAG‑CCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGt             <  4:252016/149‑1 (MQ=255)                                                                                                                                                 aGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgc           <  6:169870/143‑1 (MQ=255)                                                                                                                                                 aGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgc           >  5:169870/1‑143 (MQ=255)                                                                                                                                                   gcgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgcaggagcag   <  4:289694‑M2/146‑1 (MQ=255)                                                                                                                                                    cgAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgcaggagcagg  <  1:163285‑M2/147‑1 (MQ=255)                                                                                                                                                     gAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgcaggagcagg  >  7:305708‑M2/2‑148 (MQ=255)                                                                                                                                                     gAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTgcaggagcagg  >  3:167409‑M2/2‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCC‑GGGTTGTTCGAGGATGGCACCGCCGGCCAGACGCCTATTCTGCCGATGTGGCAGCGCGCCCTGGCAGGCGAGCAGTTCATCGAGATCGGCACCTTCGGCAAGCCCCCCGCGGTGCGTCATTATGAGTTGCGCTTCAATGCCTTGCGCGACCCCAAAGGCGAGGTACAGGGCGCGTTTCTGTTCGCCTATGACATCAGTGAGCGAGTGCAGGAGCAGG  >  NC_002947/4019887‑4020181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.