New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4107331	38 (0.690)	5 (0.090)	5/248	NT	11.9%	coding (66/429 nt)	PP_3614	membrane protein
	?	NC_002947	= 4107357	37 (0.690)					coding (40/429 nt)	PP_3614	membrane protein

GGTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4107183‑4107331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGCCCGCTGCATGCCCTGCTGCTGGC‑GGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTGGAGCAACTTCGCCGCCTGGCTCATCGCCGGGGCCCTGGTCTTCTGTGGG  <  NC_002947/4107357‑4107211                                                                                                                                                                                                                                                                                                           GGTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC                                                                                                                                                      >  1:35161/1‑149                                     AGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCAGCCCGCTGCATGCCCTGCTGCTGGC‑GGGCAGTGTG                                                                                                                 <  4:105239/149‑1                                                                  GCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACT‑‑‑‑‑GCCCGCTGCATGCCCTGCTGCTGGC‑GGG                                                                                                                        <  5:288230/108‑1                                                                  GCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACT‑‑‑‑‑GCCCGCTGCATGCCCTGCTGCTGGC‑GGG                                                                                                                        >  6:288230/1‑108                                                                                                                                 AGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTGGA                                                 >  1:339660/1‑121                                                                                                                                 AGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTGGA                                                 <  2:339660/121‑1                                                                                                                                                  GCCCCGCCCGCTGCATGCCCTGCTGCGGGC‑GGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTTGCGCAACTTCGCCGCCGGGCCCATCGCCGGGGCCCTGGTCTTCTGTG    <  1:10415/149‑1                                                                                                                                                    CCAGCCCGCTGCATGCCCTGCTGCTGGC‑GGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTGGAGCAACTTCGCCGCCTGGCTCATCGCCGGGGCCCTGGTCTTCTGTGGG  <  3:236539/149‑1                                                                                                                                                                                                                                                                                                           GGTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4107183‑4107331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGCCCGCTGCATGCCCTGCTGCTGGC‑GGGCAGTGTGCCGTTGTTCCTTGGCGCGCTGCTGAGCGATATCGCCTACTACAACAGCTATCAGATTCAGTGGAGCAACTTCGCCGCCTGGCTCATCGCCGGGGCCCTGGTCTTCTGTGGG  <  NC_002947/4107357‑4107211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.