New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4107331	38 (0.690)	5 (0.090)	5/248	NT	11.9%	coding (66/429 nt)	PP_3614	membrane protein
	?	NC_002947	= 4107357	37 (0.690)					coding (40/429 nt)	PP_3614	membrane protein

GGTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGC  >  NC_002947/4107183‑4107478                                                                                                                                                     |                                                                                                                                                     ggTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC                                                                                                                                                      >  1:35161‑M1/1‑149 (MQ=255)     ggCCAGCGCGAACAACAGTGCCAGCCCACAGCAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑Gcc                                                                                                                                                  <  4:57176/148‑1 (MQ=255)       ccAGCCCGAACAACAGTGCAAGACCACAGAAGCCCACGGCCCCAGCGATGAGCCAGGCGCCGAAGTTGCTACACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCcag                                                                                                                                                >  6:358355/1‑148 (MQ=255)           cgcgAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCcagcagca                                                                                                                                           <  4:322503/149‑1 (MQ=255)              gAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAggg                                                                                                                                        <  2:257086/149‑1 (MQ=255)                  aacaGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATg                                                                                                                                    <  4:263092/149‑1 (MQ=255)                  aacaGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATg                                                                                                                                    >  4:135463/1‑149 (MQ=255)                    caGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCAt                                                                                                                                     >  1:105252/1‑146 (MQ=255)                    caGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCAt                                                                                                                                     <  2:105252/146‑1 (MQ=255)                       tGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCg                                                                                                                               <  2:216130/149‑1 (MQ=255)                             cccACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTgg                                                                                                                         <  3:236539‑M2/149‑3 (MQ=255)                               cacaGAAGACCAGGGCCCCGGCGATGGGCCCGGCGGCGAAGTTGCGCAACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCCGCAGCAGGGCATGCAGCGGGCGgggc                                                                                                                       <  1:10415‑M2/149‑5 (MQ=255)                                acaGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCg                                                                                                                      >  8:219821/1‑149 (MQ=255)                                   gaagaCCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGc                                                                                                                                   <  8:261147/133‑1 (MQ=255)                                   gaagaCCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGc                                                                                                                                   >  7:261147/1‑133 (MQ=255)                                     agaCCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCagcccgctgcatgccctgctgctggcgggcagtgtg                                                                                                                  <  4:105239‑M1/149‑37 (MQ=255)                                         cAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCgg                                                                                                              >  5:123026/1‑148 (MQ=255)                                               cccGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGATGGGCGTACAGCGGTAGAggg                                                                                                       >  7:224292/1‑149 (MQ=255)                                                ccGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGt                                                                                                      >  2:265715/1‑149 (MQ=255)                                                 cGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGtt                                                                                                     <  4:236539/149‑1 (MQ=255)                                                    cGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGa                                                                                                  <  1:265715/149‑1 (MQ=255)                                                           ccAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTg                                                                                           <  2:10415/149‑1 (MQ=255)                                                                  gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCAc                                                                                    <  2:49537/149‑1 (MQ=255)                                                                  gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCAc                                                                                    <  3:135463/149‑1 (MQ=255)                                                                  gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACT‑‑‑cccgctgcatgccctgctgctggcggg                                                                                                                            >  6:288230‑M1/1‑81 (MQ=255)                                                                  gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACT‑‑‑cccgctgcatgccctgctgctggcggg                                                                                                                            <  5:288230‑M1/108‑28 (MQ=255)                                                                    gAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACgg                                                                                  >  8:284186/1‑149 (MQ=255)                                                                            tCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCAGCCCGCTGCATGCCCTGCTGCTGGCggcagtgtgccgttgttcct                                                                                                        >  1:339660‑M2/1‑101 (MQ=255)                                                                            tCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCAGCCCGCTGCATGCCCTGCTGCTGGCggcagtgtgccgttgttcct                                                                                                        <  2:339660‑M2/121‑21 (MQ=255)                                                                              cACTGAATCTGATAGCTGTTGTAGTAGACGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGcctcct                                                                          <  5:257810/147‑1 (MQ=255)                                                                                   aaTCTGATAGCTGTTGTAGTAGGCGATATAGCTCAGCAGCGAGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGTTCACGGTGCCTCCTTttcatt                                                                   <  6:361473/149‑1 (MQ=255)                                                                                        gATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCa                                                                                               <  4:196266/116‑1 (MQ=255)                                                                                        gATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCa                                                                                               >  3:196266/1‑116 (MQ=255)                                                                                         aTAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTttcattca                                                                 <  6:123026/145‑1 (MQ=255)                                                                                                ttgtAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAggg                                                      <  7:219821/149‑1 (MQ=255)                                                                                                ttgtAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAgg                                                       <  7:280621/148‑1 (MQ=255)                                                                                                      tagGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGt                                                                                 >  1:62836/1‑116 (MQ=255)                                                                                                      tagGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGt                                                                                 <  2:62836/116‑1 (MQ=255)                                                                                                                 gCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTgcgc                                      >  1:43041/1‑148 (MQ=255)                                                                                                                      gcagcGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAg                                <  7:284186/149‑1 (MQ=255)                                                                                                                        agcGCGCCAAGGAACATCGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCCGGTGCGGTCACGGTGCCTGCTTTTCATTCAGTGACGCAGTGGCTGATGGTCTTGCGCCATCAGGt                              <  5:358355/149‑1 (MQ=255)                                                                                                                               cAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAgcg                         >  6:82415/1‑147 (MQ=255)                                                                                                                                aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATg                                               >  6:202611/1‑124 (MQ=255)                                                                                                                                aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATg                                               <  5:202611/124‑1 (MQ=255)                                                                                                                                aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAg                      >  3:174213/1‑149 (MQ=255)                                                                                                                                 aGGAACAACGGCACACTGCCCgccagcagcagggcatgcagcgggctgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtgga                                                  <  2:339660‑M1/121‑101 (MQ=255)                                                                                                                                 aGGAACAACGGCACACTGCCCgccagcagcagggcatgcagcgggctgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtgga                                                  >  1:339660‑M1/1‑21 (MQ=255)                                                                                                                                      caacGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTgcg                >  2:228654/1‑149 (MQ=255)                                                                                                                                          ggCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTa            <  2:43041/149‑1 (MQ=255)                                                                                                                                            cacaCTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgccgcctggctcatcgccggggccctggtct          <  4:105239‑M2/149‑114 (MQ=255)                                                                                                                                               acTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCa         >  5:330195/1‑147 (MQ=255)                                                                                                                                                  gCCCcgcccgctgcatgccctgctgcgggcgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagttgcgcaacttcgccgccgggcccatcgccggggccctggtcttctgtg     <  1:10415‑M1/149‑146 (MQ=255)                                                                                                                                                   ccc‑GCCAGCAGCAGGGCATGCAGCGGGCgtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgc                                             >  6:288230‑M2/1‑29 (MQ=255)                                                                                                                                                   ccc‑GCCAGCAGCAGGGCATGCAGCGGGCgtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgc                                             <  5:288230‑M2/108‑80 (MQ=255)                                                                                                                                                    ccagcccgctgcatgccctgctgctggcgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgccgcctggctcatcgccggggccctggtcttctgtggg   <  3:236539‑M1/149‑148 (MQ=255)                                                                                                                                                    cc‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGc  >  8:185410/1‑149 (MQ=255)                                                                                                                                                    cc‑GCCAGCAGCAGGGCATGCAGCGGCCTGGGCGTACACCGGTAGAGGGATTGATCAGCTGCGGTCACCGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGc  >  1:278332/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGTTGGCCAGCGCGAACAACAGTGCCAGCCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGC  >  NC_002947/4107183‑4107478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.