New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4107331	38 (0.690)	5 (0.090)	5/248	NT	11.9%	coding (66/429 nt)	PP_3614	membrane protein
	?	NC_002947	= 4107357	37 (0.690)					coding (40/429 nt)	PP_3614	membrane protein

CCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGCCCCTTGACGCCCCGATAGT  >  NC_002947/4107211‑4107497                                                                                                                                                    |                                                                                                                                             cccACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTgg                                                                                                                                            <  3:236539‑M2/149‑3 (MQ=255)   cacaGAAGACCAGGGCCCCGGCGATGGGCCCGGCGGCGAAGTTGCGCAACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCCGCAGCAGGGCATGCAGCGGGCGgggc                                                                                                                                          <  1:10415‑M2/149‑5 (MQ=255)    acaGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCg                                                                                                                                         >  8:219821/1‑149 (MQ=255)             cAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCgg                                                                                                                                 >  5:123026/1‑148 (MQ=255)                   cccGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGATGGGCGTACAGCGGTAGAggg                                                                                                                          >  7:224292/1‑149 (MQ=255)                    ccGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGt                                                                                                                         >  2:265715/1‑149 (MQ=255)                     cGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGtt                                                                                                                        <  4:236539/149‑1 (MQ=255)                        cGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGa                                                                                                                     <  1:265715/149‑1 (MQ=255)                               ccAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTg                                                                                                              <  2:10415/149‑1 (MQ=255)                                      gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCAc                                                                                                       <  3:135463/149‑1 (MQ=255)                                      gcgAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCAc                                                                                                       <  2:49537/149‑1 (MQ=255)                                        gAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACgg                                                                                                     >  8:284186/1‑149 (MQ=255)                                                tCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCAGCCCGCTGCATGCCCTGCTGCTGGCggcagtgtgccgttgttcct                                                                                                                           <  2:339660‑M2/121‑21 (MQ=255)                                                tCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCCAGCCCGCTGCATGCCCTGCTGCTGGCggcagtgtgccgttgttcct                                                                                                                           >  1:339660‑M2/1‑101 (MQ=255)                                                  cACTGAATCTGATAGCTGTTGTAGTAGACGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGcctcct                                                                                             <  5:257810/147‑1 (MQ=255)                                                       aaTCTGATAGCTGTTGTAGTAGGCGATATAGCTCAGCAGCGAGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGTTCACGGTGCCTCCTTttcatt                                                                                      <  6:361473/149‑1 (MQ=255)                                                            gATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCa                                                                                                                  >  3:196266/1‑116 (MQ=255)                                                            gATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCa                                                                                                                  <  4:196266/116‑1 (MQ=255)                                                             aTAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTttcattca                                                                                    <  6:123026/145‑1 (MQ=255)                                                                    ttgtAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAggg                                                                         <  7:219821/149‑1 (MQ=255)                                                                    ttgtAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAgg                                                                          <  7:280621/148‑1 (MQ=255)                                                                          tagGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGt                                                                                                    >  1:62836/1‑116 (MQ=255)                                                                          tagGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGt                                                                                                    <  2:62836/116‑1 (MQ=255)                                                                                     gCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTgcgc                                                         >  1:43041/1‑148 (MQ=255)                                                                                          gcagcGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAg                                                   <  7:284186/149‑1 (MQ=255)                                                                                            agcGCGCCAAGGAACATCGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCCGGTGCGGTCACGGTGCCTGCTTTTCATTCAGTGACGCAGTGGCTGATGGTCTTGCGCCATCAGGt                                                 <  5:358355/149‑1 (MQ=255)                                                                                                   cAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAgcg                                            >  6:82415/1‑147 (MQ=255)                                                                                                    aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATg                                                                  <  5:202611/124‑1 (MQ=255)                                                                                                    aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATg                                                                  >  6:202611/1‑124 (MQ=255)                                                                                                    aaGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAg                                         >  3:174213/1‑149 (MQ=255)                                                                                                          caacGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTgcg                                   >  2:228654/1‑149 (MQ=255)                                                                                                              ggCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTa                               <  2:43041/149‑1 (MQ=255)                                                                                                                cacaCTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTgggcagtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgccgcctggctcatcgccggggccctggtct                             <  4:105239‑M2/149‑114 (MQ=255)                                                                                                                   acTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCa                            >  5:330195/1‑147 (MQ=255)                                                                                                                       ccc‑GCCAGCAGCAGGGCATGCAGCGGGCgtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgc                                                                <  5:288230‑M2/108‑80 (MQ=255)                                                                                                                       ccc‑GCCAGCAGCAGGGCATGCAGCGGGCgtgtgccgttgttccttggcgcgctgctgagcgatatcgcctactacaacagctatcagattcagtggagcaacttcgc                                                                >  6:288230‑M2/1‑29 (MQ=255)                                                                                                                        cc‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGc                     >  8:185410/1‑149 (MQ=255)                                                                                                                        cc‑GCCAGCAGCAGGGCATGCAGCGGCCTGGGCGTACACCGGTAGAGGGATTGATCAGCTGCGGTCACCGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGc                     >  1:278332/1‑149 (MQ=255)                                                                                                                           gCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGccc                   <  5:82415/149‑1 (MQ=255)                                                                                                                              agcagcagGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCACCCTGCGCTTac                              <  2:306761/135‑2 (MQ=255)                                                                                                                              agcagcagGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCACCCTGCGCTTac                              >  1:306761/1‑134 (MQ=255)                                                                                                                                     gggCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGCCCCTTGACGccc         >  4:279619/1‑149 (MQ=255)                                                                                                                                         aTGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGCCCCTTGACGCCCCGa      >  8:144167/1‑148 (MQ=255)                                                                                                                                            cAGCGGGATGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCATCCTTTTCATTTAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGCCCCTTGACGCACCGATAGt  >  1:12041/1‑149 (MQ=255)                                                                                                                                             aGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAg                              <  2:296149/120‑1 (MQ=255)                                                                                                                                                   cTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCtt                                >  6:243129/1‑112 (MQ=255)                                                                                                                                                   cTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCtt                                <  5:243129/112‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             CCCACAGAAGACCAGGGCCCCGGCGATGAGCCAGGCGGCGAAGTTGCTCCACTGAATCTGATAGCTGTTGTAGTAGGCGATATCGCTCAGCAGCGCGCCAAGGAACAACGGCACACTGCCC‑GCCAGCAGCAGGGCATGCAGCGGGCTGGGCGTACAGCGGTAGAGGGTTTGATCAGGTGCGGTCACGGTGCCTCCTTTTCATTCAGTGACCCAGGGGCTGATGGTCTTGCGCCATCAGGTAAGCGCAGGGTGCGCTTAGCAAAGGAGCCCCTTGACGCCCCGATAGT  >  NC_002947/4107211‑4107497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.