New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4282722	57 (1.030)	4 (0.080)	4/238	NT	7.3%	coding (508/1089 nt)	PP_3753	AraC family transcriptional regulator
	?	NC_002947	= 4282759	48 (0.930)					coding (471/1089 nt)	PP_3753	AraC family transcriptional regulator

GCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4282566‑4282722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgggcgGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAG  <  NC_002947/4282759‑4282612                                                                                                                                                                                                                                                                                                                   GCCCTTGAGGTGGACTGCGCAGAAAGGTCTTCAGTGCTGCCCGATCCTGCACCACCTGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGG                                                                                                                                                              <  8:185829/149‑1    CTTGAGGTGCACTGCGCAGAATGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCC                                                                                                                                                           <  1:81681/149‑1    CTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCC                                                                                                                                                           >  7:333988/1‑149       GAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGG                                                                                                                                                        >  7:42146/1‑149          GTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCCGGCGG                                                                                                                                                     <  6:2705/149‑1                                                      ACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGC                                                                                                         <  4:21614/149‑1                                                        CGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCC                                                                                                       <  8:172651/149‑1                                                            AGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGG                                                                                                          <  1:343094/142‑1                                                            AGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGG                                                                                                          >  2:343094/1‑142                                                                                                                                                       CCGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTG        <  5:354487/149‑1                                                                                                                                                        CGGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGG       <  5:295121/149‑1                                                                                                                                                         GGGCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGT      >  4:291388/1‑149                                                                                                                                                           GCGGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTG     >  6:143905/1‑148                                                                                                                                                             GGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAG  <  5:143905/149‑1                                                                                                                                                                                                                                                                                                                   GCCCTTGAGGTGCACTGCGCAGAAAGGTCTTCAGGGCTGCCCGATCCTGCACCACCGGCAGGCGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4282566‑4282722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgggcgGCGGATTGCCATCGACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGGTGGTGCAG  <  NC_002947/4282759‑4282612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.