New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4285454 = | 37 (0.670) | 4 (0.080) | 4/244 | NT | 10.5% | intergenic (+10/‑3) | hbd/PP_3756 | 3‑hydroxybutyryl‑CoA dehydrogenase/TetR family transcriptional regulator |
? | NC_002947 | 4285522 = | 33 (0.630) | coding (66/582 nt) | PP_3756 | TetR family transcriptional regulator |
TACAGCGAGCCGGCGGTAAGCCCCACATGGGCCGCCAGCTCGCGCATGCTGACCTGGCCAAAGCCCTTTTCGGCAAACAATGCCATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4285602‑4285454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTTGTACGAAGAGCTGCAG > NC_002947/4285522‑4285669 TACAGCGAGCCGGCGGTAAGCCCCACATGGGCCGCCAGCTCGCGCATGCTGACCTGGCCAAAGCCCTTTTCGGCAAACAATGCCATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGC > 1:104751/1‑149 CCATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTAC > 8:121607/1‑149 CATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCCGCATGCGCGAGCTGGC‑GGCCCATGT > 8:235704/1‑123 CATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGGCAGCATGCGCGAGCTGGC‑GGCCCATGT < 7:235704/123‑1 CAGCGCATTGCGGCATTGACCGGGGGCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGA < 7:121607/149‑1 CATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGGCCCATGTGGGCATTACCGCCGGCTCGCTGTACCATCACTTTCCCACCAAGCAGGACCTGCTTTACGACTTGATCGAAGAGTTGTACCAAGAG > 1:273167/1‑149 CATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGTCTTACCGCCCGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACATGATCGAAGAGTTGTACGAAGAGCTGCAG > 3:61177/1‑149 CATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCGGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTCGTACGAAGAGCTGCAG < 5:356360/149‑1 TACAGCGAGCCGGCGGTAAGCCCCACATGGGCCGCCAGCTCGCGCATGCTGACCTGGCCAAAGCCCTTTTCGGCAAACAATGCCATGGCCCGGTCACGTCGCTCCTCAAAGTTGGCACAGCGCATTGCGGCATTGACCGGGGGCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4285602‑4285454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTTGTACGAAGAGCTGCAG > NC_002947/4285522‑4285669 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |