New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4285454 =	37 (0.670)	4 (0.080)	4/244	NT	10.5%	intergenic (+10/‑3)	hbd/PP_3756	3‑hydroxybutyryl‑CoA dehydrogenase/TetR family transcriptional regulator
	?	NC_002947	4285522 =	33 (0.630)					coding (66/582 nt)	PP_3756	TetR family transcriptional regulator

AAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTTGTACGAAGAGCTGCAG  >  NC_002947/4285382‑4285669                                                                                                                                              |                                                                                                                                                     aaGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGttt                                                                                                                                                <  3:12149/147‑1 (MQ=255) aaGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGc                                                                                                                                              >  3:111748/1‑149 (MQ=255)           tCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGc                                                                                                                                    <  4:111748/149‑1 (MQ=255)              cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                                                                                                 <  8:948/149‑1 (MQ=255)              cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                                                                                                 <  6:93182/149‑1 (MQ=255)              cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                                                                                                 >  2:104751/1‑149 (MQ=255)                     ctggctagGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAg                                                                                                                           <  6:301236/149‑1 (MQ=255)                         gcgggcgcgcAAGAGCGGTCGCGGTTTCTTCACCTAATGAGGAGCAACCGCCATGCCCCCGGTCAATGCCGCAATGCGATGGGCCAACTTTGAGGAGCGACGTGACCGTGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCa                                                                                                                       <  8:148789/143‑1 (MQ=255)                             gggCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGATGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCAt                                                                                                                   >  3:121373/1‑149 (MQ=255)                                cgcAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATgcg                                                                                                                >  1:126487/1‑149 (MQ=255)                                                    cttcACCTAGTGAGGAGCAAGCGCCATGCCCCCGGACAATGCCGCAAAGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCAtgtg                                                                                            <  8:320812/148‑1 (MQ=255)                                                                aggagCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTAccgcc                                                                                <  6:345210/148‑1 (MQ=255)                                                                   agCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCt                                                                            >  7:171899/1‑149 (MQ=255)                                                                     cAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGc                                                                                                                                              >  2:142938/1‑82 (MQ=255)                                                                      aaGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGc                                                                         <  4:121373/149‑1 (MQ=255)                                                                       aGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCt                                                                        >  3:244245/1‑149 (MQ=255)                                                                       aGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCt                                                                        >  3:277403/1‑149 (MQ=255)                                                                         cgcCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGt                                                                      <  4:244245/149‑1 (MQ=255)                                                                         cgcCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGt                                                                      <  8:171899/149‑1 (MQ=255)                                                                          GCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTa                                                                     >  1:104751‑M1/1‑149 (MQ=255)                                                                           ccatggcccggtcacgtcgctcctcaaagttggcacagcgcattgcggcattgaccgggggcatggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTAc                                                                    >  8:121607‑M2/68‑149 (MQ=255)                                                                            catggcccggtcacgtcgctcctcaaagttggcacagcgcattgcggcattgaccgggggcatggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCCGCATGCGCGAGCTGGC‑GGCCCAtgt                                                                                             >  8:235704‑M2/67‑123 (MQ=255)                                                                            catggcccggtcacgtcgctcctcaaagttggcacagcgcattgcggcattgaccgggggcatggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGGCAGCATGCGCGAGCTGGC‑GGCCCAtgt                                                                                             <  7:235704‑M2/57‑1 (MQ=255)                                                                                  cccGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTAcc                                                                   <  5:298517/143‑1 (MQ=255)                                                                                  cccGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTAcc                                                                   >  6:298517/1‑143 (MQ=255)                                                                                  cccGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACt                                                             >  5:294114/1‑149 (MQ=255)                                                                                    ctgTCACTGACGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAACGGGCCTTGGCCAGGTCAGCATGCGGGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGAACCATCACttt                                                           <  4:261969/147‑1 (MQ=255)                                                                                             ccGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCagcaa                                                   <  4:316947/148‑1 (MQ=255)                                                                                                      gcTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCACATGTGGGGCTTACCGACGGCTCGCTGTACCATCACTTTCCAAGCAAGCAGGACctt                                         >  8:298428/1‑148 (MQ=255)                                                                                                          tgCCAACTTTGATGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACctgctg                                      <  1:121506/148‑1 (MQ=255)                                                                                                          tgCCAACTTTGAGGAGCGACTTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACctgctg                                      <  7:298428/148‑1 (MQ=255)                                                                                                            ccAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTAc                                   >  2:194199/1‑149 (MQ=255)                                                                                                              cagcgcattgcggcattgaccgggggcatggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGa                                 <  7:121607‑M2/117‑1 (MQ=255)                                                                                                                     aggagCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATc                          <  6:294114/149‑1 (MQ=255)                                                                                                                     aggagCGACGTGACCGGGCCATGGCATTGTTTACCGAAAAGGGCTTTGTCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGAt                           <  4:57270/148‑1 (MQ=255)                                                                                                                        agCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGaa                       <  4:277403/149‑1 (MQ=255)                                                                                                                             cGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGtt                  >  1:198464/1‑149 (MQ=255)                                                                                                                                 aCCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTTGTa               <  2:126487/148‑1 (MQ=255)                                                                                                                                        catggcATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGGCCCATGTGGGCATTACCGCCGGCTCGCTGTACCATCACTTTCCCACCAAGCAGGACCTGCTTTACGACTTGATCGAAGAGTTGTACCAagag        >  1:273167‑M2/7‑149 (MQ=255)                                                                                                                                             cATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGTCTTACCGCCCGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACATGATCGAAGAGTTGTACGAAGAGCTGCAg  >  3:61177‑M2/2‑149 (MQ=255)                                                                                                                                             cATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCGGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTCGTACGAAGAGCTGCAg  <  5:356360‑M2/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     AAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTCACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGC‑GGCCCATGTGGGGCTTACCGCCGGCTCGCTGTACCATCACTTTCCCAGCAAGCAGGACCTGCTGTACGACTTGATCGAAGAGTTGTACGAAGAGCTGCAG  >  NC_002947/4285382‑4285669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.