New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4285454 =	37 (0.670)	4 (0.080)	4/244	NT	10.5%	intergenic (+10/‑3)	hbd/PP_3756	3‑hydroxybutyryl‑CoA dehydrogenase/TetR family transcriptional regulator
	?	NC_002947	4285522 =	33 (0.630)					coding (66/582 nt)	PP_3756	TetR family transcriptional regulator

ACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCTGTA  >  NC_002947/4285308‑4285602                                                                                                                                                     |                                                                                                                                                     ctgcagctcttcgtacgactcttcgatcaagtcgtacagcaggtcctgcttgctgggaaagtgatggtacagcgagccggcggtaagccccacatgggccgcccgctcgcgcatgctgacctggccaaagcccttttcggcaaacaatg                                                                                                                                                      <  5:356360‑M1/1‑1 (MQ=255) ctgcagctcttcgtacaactcttcgatcatgtcgtacagcaggtcctgcttgctgggaaagtgatggtacagcgagcgggcggtaagacccacatgggccgccagctcgcgcatgctgacctggccaaagcccttttcggcaaacaatg                                                                                                                                                      >  3:61177‑M1/149‑149 (MQ=255)     ccTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCAt                                                                                                                                                  <  1:305085/147‑1 (MQ=255)     ccTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCAt                                                                                                                                                  >  2:305085/1‑147 (MQ=255)      ctcttggtacaactcttcgatcaagtcgtaaagcaggtcctgcttggtgggaaagtgatggtacagcgagccggcggtaatgcccacatgggcccgccagctcgcgcatgctgacctggccaaagcccttttcggcaaacaatgccatg                                                                                                                                                 >  1:273167‑M1/144‑149 (MQ=255)            gCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACAGAGGAGCAAGCGCCATGCCCCCGGt                                                                                                                                         >  7:155700/1‑149 (MQ=255)              aaTCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCTAGGGCCGCAAAACCGGACGCGGTTTCTAC‑ACCAAATCAGCAGAAAGCCCCATGCCCCCgga                                                                                                                                         >  5:301236/1‑147 (MQ=255)               aTCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCaa                                                                                                                                      <  4:97429/149‑1 (MQ=255)                 cATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATg                                                                                                                                    >  7:948/1‑149 (MQ=255)                    ggAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATG‑GCCCGGTCacgtcgct                                                                                                                                >  7:248808/1‑142 (MQ=255)                          cTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATgc                                                                                                                           >  1:61016/1‑149 (MQ=255)                           ttCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATgcg                                                                                                                          >  2:121506/1‑149 (MQ=255)                              cACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGGTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCtg                                                                                                                       >  5:93182/1‑149 (MQ=255)                              cACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGGCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGGCGCGGTTTCTTC‑ACCTACTGACGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCtg                                                                                                                       <  7:237650/149‑1 (MQ=255)                               aCGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCAt                                                                                                                                                  >  4:42667/1‑121 (MQ=255)                               aCGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCAt                                                                                                                                                  <  3:42667/121‑1 (MQ=255)                               aCGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAAt                                                                                                                             <  4:215420/142‑1 (MQ=255)                               aCGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAAt                                                                                                                             >  3:215420/1‑142 (MQ=255)                                tcgtacagcaggtcctgcttgctgggaaagtgatggtacagcgagccggcggtaagccccacatgggccgccagctcgcgcatgctgacctggccaaagcccttttcggcaaacaatGCCATGCCCCCGGTCAATGCCGCAATGCGCtg                                                                                                                       <  7:121607‑M1/32‑1 (MQ=255)                                      cTTCAACGTCATGAAATTCCGCCCTGCTACACTGCTCAAGGAAATTGGCGCGGCCGGCTTGCT‑GGGGCGGAATATCGGTAGCGGTTTCTTCTACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCaa                                                                                                                 <  1:277521/148‑1 (MQ=255)                                       ttCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCGGGTCAATGCGGCAATGCGCTGTGCCAAGtt                                                                                                              >  3:57270/1‑149 (MQ=255)                                       ttCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACtt                                                                                                              >  4:12149/1‑149 (MQ=255)                                          aaCGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTg                                                                                                            <  8:155700/148‑1 (MQ=255)                                           aCGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTgag                                                                                                          <  7:183865/149‑1 (MQ=255)                                             gACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTgag                                                                                                          >  5:345210/1‑147 (MQ=255)                                              aCAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTgaggag                                                                                                       >  3:316947/1‑149 (MQ=255)                                              aCAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTgaggag                                                                                                       <  8:79041/149‑1 (MQ=255)                                               cAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGcc                                                                                                                   >  2:123104/1‑136 (MQ=255)                                               cAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGAGGTAGCGGTTTCTTC‑AGCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACATTGAGGAGc                                                                                                      >  3:222199/1‑149 (MQ=255)                                                  cataTACTGCCCTGCTCCACTGGTCTAGGATATGGTCGCGGCCGGCTGGCT‑GGGGCGCTAGAGAGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCTATTCGGCAATGCGCTGTGCCAAATTTgaggagatac                                                                                                   <  4:222199/146‑5 (MQ=255)                                                   aaaTACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACg                                                                                                  >  7:320812/1‑149 (MQ=255)                                                          gCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCgg                                                                                           <  2:61016/149‑1 (MQ=255)                                                                   gtacagcgagccggcggtaagccccacatgggccgccagctcgcgcatgctgacctggccaaagcccttttcggcaaacaatGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATgg                                                                                    >  8:121607‑M1/83‑149 (MQ=255)                                                                           aaGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGttt                                                                            <  3:12149/147‑1 (MQ=255)                                                                           aaGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGc                                                                          >  3:111748/1‑149 (MQ=255)                                                                                     tCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGc                                                                <  4:111748/149‑1 (MQ=255)                                                                                        cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                             <  8:948/149‑1 (MQ=255)                                                                                        cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                             <  6:93182/149‑1 (MQ=255)                                                                                        cggccggcTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCttt                                                             >  2:104751/1‑149 (MQ=255)                                                                                            acatgggccgccagctcgcgcatgctgccctggccaaagcccttttcggcaaacaatGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATg                                                                                     <  7:235704‑M1/66‑1 (MQ=255)                                                                                            acatgggccgccagctcgcgcatgcggacctggccaaagcccttttcggcaaacaatGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATg                                                                                     >  8:235704‑M1/58‑123 (MQ=255)                                                                                               ctggctagGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAg                                                       <  6:301236/149‑1 (MQ=255)                                                                                                   gcgggcgcgcAAGAGCGGTCGCGGTTTCTTC‑ACCTAATGAGGAGCAACCGCCATGCCCCCGGTCAATGCCGCAATGCGATGGGCCAACTTTGAGGAGCGACGTGACCGTGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCa                                                   <  8:148789/143‑1 (MQ=255)                                                                                                       gggCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGATGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCAt                                               >  3:121373/1‑149 (MQ=255)                                                                                                          cgcAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATgcg                                            >  1:126487/1‑149 (MQ=255)                                                                                                                              cttc‑ACCTAGTGAGGAGCAAGCGCCATGCCCCCGGACAATGCCGCAAAGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCAtgtg                         <  8:320812/148‑1 (MQ=255)                                                                                                                                           aggagCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTAccgcc             <  6:345210/148‑1 (MQ=255)                                                                                                                                              agCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCt         >  7:171899/1‑149 (MQ=255)                                                                                                                                                cAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGc                                                                          >  2:142938/1‑82 (MQ=255)                                                                                                                                                 aaGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGc      <  4:121373/149‑1 (MQ=255)                                                                                                                                                  aGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCt     >  3:244245/1‑149 (MQ=255)                                                                                                                                                  aGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCt     >  3:277403/1‑149 (MQ=255)                                                                                                                                                    cgcCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCTGt   <  8:171899/149‑1 (MQ=255)                                                                                                                                                    cgcCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCTGt   <  4:244245/149‑1 (MQ=255)                                                                                                                                                     GCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCTGTa  >  1:104751‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGGCCGGCTGGCT‑GGGGCGCAAGAGCGGTCGCGGTTTCTTC‑ACCTACTGAGGAGCAAGCGCCATGCCCCCGGTCAATGCCGCAATGCGCTGTGCCAACTTTGAGGAGCGACGTGACCGGGCCATGGCATTGTTTGCCGAAAAGGGCTTTGGCCAGGTCAGCATGCGCGAGCTGGCGGCCCATGTGGGGCTTACCGCCGGCTCGCTGTA  >  NC_002947/4285308‑4285602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.