New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4739198 =	36 (0.650)	4 (0.080)	3/246	NT	10.2%	intergenic (‑77/‑276)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
	?	NC_002947	4739238 =	36 (0.680)					intergenic (‑117/‑236)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase

CACCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4739241‑4739198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAG  >  NC_002947/4739238‑4739382                                                                                                                                                                                               CACCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGG                                          >  2:303535/1‑149   CCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGA                                        <  1:303535/149‑1   CCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGG                                         >  1:144710/1‑148   CCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGG                                         >  5:315092/1‑148                                        GGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTA   <  4:236495/149‑1                                         GTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAG  <  2:20345/149‑1                                         GTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAG  >  7:51380/1‑149                                                                                                                                                                                               CACCCGACCGCCAGGGGCTTGCAAGCCCGAACTGCTGGGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4739241‑4739198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAG  >  NC_002947/4739238‑4739382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.