New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4739198 =	36 (0.650)	4 (0.080)	3/246	NT	10.2%	intergenic (‑77/‑276)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
	?	NC_002947	4739238 =	36 (0.680)					intergenic (‑117/‑236)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase

CAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAGGCA  >  NC_002947/4739091‑4739385                                                                                                                                                    |                                                                                                                                                    tcccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg                                                                                                                                                    <  1:303535‑M1/42‑1 (MQ=255)  cccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg                                                                                                                                                    >  1:144710‑M1/107‑148 (MQ=255)  cccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg                                                                                                                                                    >  5:315092‑M1/107‑148 (MQ=255)   ccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTg                                                                                                                                                  >  2:303535‑M1/106‑149 (MQ=255)               ttCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGa                                                                                                                                       <  7:112823/148‑1 (MQ=255)                      cTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAg                                                                                                                                <  1:194735/148‑1 (MQ=255)                      cTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAg                                                                                                                                >  2:194735/1‑148 (MQ=255)                           ttCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGgctgct                                                                                                                          >  1:162702/1‑149 (MQ=255)                                  tGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGAc                                                                                                                    >  2:26383/1‑148 (MQ=255)                                            cTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACggg                                                                                                         >  2:275117/1‑149 (MQ=255)                                                     cAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAg                                                                                                                                        <  3:78967/109‑1 (MQ=255)                                                     cAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAg                                                                                                                                        >  4:78967/1‑109 (MQ=255)                                                      aGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACACACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCaaa                                                                                               <  8:308295/149‑1 (MQ=255)                                                          cAAAGTTGTTGGTAAGTGTACTGGTCAGTTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCg                                                                                                                                               >  5:243784/1‑97 (MQ=255)                                                          cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCg                                                                                                                                               <  6:243784/97‑1 (MQ=255)                                                          cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTACAGACAGTTAGgctgc                                                                                                                           <  4:305384/117‑1 (MQ=255)                                                          cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTACAGACAGTTAGgctgc                                                                                                                           >  3:305384/1‑117 (MQ=255)                                                                     gTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAgg                                                                                                                               <  2:147408/102‑1 (MQ=255)                                                                     gTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAgg                                                                                                                               >  1:147408/1‑102 (MQ=255)                                                                               tGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACaa                                                                       >  3:236495/1‑148 (MQ=255)                                                                                 gTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAg                                                                    >  8:89896/1‑149 (MQ=255)                                                                                  tCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAgg                                                                   <  7:89896/149‑1 (MQ=255)                                                                                          ccaccaCCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGc                                                                  >  6:322840/1‑142 (MQ=255)                                                                                          ccaccaCCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGc                                                                  <  5:322840/142‑1 (MQ=255)                                                                                            accaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGt                                                                                                       >  2:4421/1‑103 (MQ=255)                                                                                            accaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGt                                                                                                       <  1:4421/103‑1 (MQ=255)                                                                                             ccaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGc                                                        <  2:162702/149‑1 (MQ=255)                                                                                               accCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGc                                                        >  2:79097/1‑147 (MQ=255)                                                                                                   aGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAAc                                                                         <  5:220801/126‑1 (MQ=255)                                                                                                        cacccgaccgccaggggcttgcaagcccgaactgctgggggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCgg                                             >  2:303535‑M2/45‑149 (MQ=255)                                                                                                        aCGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCgg                                             <  1:275117/149‑1 (MQ=255)                                                                                                          cccgaccgccaggggcttgcaagcccgaactgctgggggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCggg                                            >  1:144710‑M2/43‑148 (MQ=255)                                                                                                          cccgaccgccaggggcttgcaagcccgaactgctgggggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCggg                                            >  5:315092‑M2/43‑148 (MQ=255)                                                                                                          cccgaccgccaggggcttgcaagcccgaactgctgggggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGa                                           <  1:303535‑M2/107‑1 (MQ=255)                                                                                                                  ccAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAg                                   >  5:359571/1‑149 (MQ=255)                                                                                                                  ccAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAg                                   >  1:20345/1‑149 (MQ=255)                                                                                                                         ttCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAgg                                  >  5:83465/1‑143 (MQ=255)                                                                                                                         ttCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAgg                                  <  6:83465/143‑1 (MQ=255)                                                                                                                             ggCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGc                                                                                    >  5:316276/1‑89 (MQ=255)                                                                                                                             ggCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGc                                                                                    <  6:316276/89‑1 (MQ=255)                                                                                                                              gCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCt                       >  7:307347/1‑149 (MQ=255)                                                                                                                                      gCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCAGATTcaa                >  7:83702/1‑148 (MQ=255)                                                                                                                                      gCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGCGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTcaac               <  1:26383/149‑1 (MQ=255)                                                                                                                                         ccTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAg            >  4:44805/1‑149 (MQ=255)                                                                                                                                             gCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGcc          <  6:359571/147‑1 (MQ=255)                                                                                                                                               ggtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTa      <  4:236495‑M2/144‑1 (MQ=255)                                                                                                                                                gtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAg     >  7:51380‑M2/5‑149 (MQ=255)                                                                                                                                                gtcgGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAg     <  2:20345‑M2/145‑1 (MQ=255)                                                                                                                                                    ggTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAGGCa  >  2:274970/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGGGAAAAATCAGGCTTGAATGCCTGATTCAACAAGCCTTTAGGCA  >  NC_002947/4739091‑4739385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.