| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4739198 = | 36 (0.650) | 4 (0.080) | 3/246 | NT | 10.2% | intergenic (‑77/‑276) | sdhC/gltA | succinate dehydrogenase membrane b‑556 subunit/citrate synthase |
| ? | NC_002947 | 4739238 = | 36 (0.680) | intergenic (‑117/‑236) | sdhC/gltA | succinate dehydrogenase membrane b‑556 subunit/citrate synthase | |||||
CGCAGTGACGGGGAGCTTGATGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGG > NC_002947/4739050‑4739342 | cGCAGTGACGGGGAGCTTGATGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGc < 8:214761/149‑1 (MQ=255) gCAGTGACGGGGAGCTTGATGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGc > 2:44504/1‑148 (MQ=255) ctaaaggcttgttgaatcaggcattcaagcctgatttttcccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGAc < 2:20345‑M1/4‑1 (MQ=255) ctaaaggcttgttgaatcaggcattcaagcctgatttttcccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGAc > 7:51380‑M1/146‑149 (MQ=255) taaaggcttgttgaatcaggcattcaagcctgatttttcccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGAcc < 4:236495‑M1/5‑1 (MQ=255) tGACGGGGAGCTTGATGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGAccc < 1:344807/149‑1 (MQ=255) tGATGGTCCTTAGGTCTAGGTTTATAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCACCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCgg > 7:308295/1‑149 (MQ=255) aTGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGc < 4:287849/149‑1 (MQ=255) ccTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACAGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCtt > 1:133444/1‑146 (MQ=255) ccTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACAGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCtt < 2:133444/146‑1 (MQ=255) gTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAAGGGCGACCCCCAGCAGTTCGGGCTTGCAAGcccc < 6:101062/149‑1 (MQ=255) tAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGATGCAGGGCAATGGTGTTGGTAAGGGTACTGGTCAGGTACCCACCACCCAGGGAACGGGGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTgg < 1:44504/149‑1 (MQ=255) gTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCg > 1:91470/1‑148 (MQ=255) gTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCg < 2:91470/148‑1 (MQ=255) tcccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg < 1:303535‑M1/42‑1 (MQ=255) cccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg > 5:315092‑M1/107‑148 (MQ=255) cccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCggg > 1:144710‑M1/107‑148 (MQ=255) ccgaaattctcgcccatttacgccttttgttcattaaaggcaatgcgctatttgggctaccccgtcacgttgtcataagcagcctaactgtctatactcggcaccCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTg > 2:303535‑M1/106‑149 (MQ=255) gTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCATGGAACGGCGACCCCCAGCAGTTCgg < 6:281768/122‑1 (MQ=255) gTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCATGGAACGGCGACCCCCAGCAGTTCgg > 5:281768/1‑122 (MQ=255) ttCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGa < 7:112823/148‑1 (MQ=255) cTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAg > 2:194735/1‑148 (MQ=255) cTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAg < 1:194735/148‑1 (MQ=255) ttCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGgctgct > 1:162702/1‑149 (MQ=255) tGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGAc > 2:26383/1‑148 (MQ=255) cTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACggg > 2:275117/1‑149 (MQ=255) cAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAg < 3:78967/109‑1 (MQ=255) cAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAg > 4:78967/1‑109 (MQ=255) aGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACACACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCaaa < 8:308295/149‑1 (MQ=255) cAAAGTTGTTGGTAAGTGTACTGGTCAGTTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCg > 5:243784/1‑97 (MQ=255) cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCg < 6:243784/97‑1 (MQ=255) cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTACAGACAGTTAGgctgc > 3:305384/1‑117 (MQ=255) cAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTACAGACAGTTAGgctgc < 4:305384/117‑1 (MQ=255) ggTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGc < 5:316984/41‑1 (MQ=255) ggTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGc > 6:316984/1‑41 (MQ=255) gTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAgg < 2:147408/102‑1 (MQ=255) gTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAgg > 1:147408/1‑102 (MQ=255) tGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACaa > 3:236495/1‑148 (MQ=255) gTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAg > 8:89896/1‑149 (MQ=255) tCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAgg < 7:89896/149‑1 (MQ=255) ccaccaCCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGc < 5:322840/142‑1 (MQ=255) ccaccaCCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGc > 6:322840/1‑142 (MQ=255) accaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGt > 2:4421/1‑103 (MQ=255) accaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGt < 1:4421/103‑1 (MQ=255) ccaccCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGc < 2:162702/149‑1 (MQ=255) accCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGc > 2:79097/1‑147 (MQ=255) aGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAAc < 5:220801/126‑1 (MQ=255) aCGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCgg < 1:275117/149‑1 (MQ=255) | CGCAGTGACGGGGAGCTTGATGGTCCTTAGGTCTAGGTTTACAGGTCGTTGGCTTTTCACGGCTTTTTTCACACTGAAGAGCCCCTAGCGAATCAGGGCAAAGTTGTTGGTAAGTGTACTGGTCAGGTACCCACCACCCAGGGAACGGCGACCCCCAGCAGTTCGGGCTTGCAAGCCCCTGGCGGTCGGGTGCCGAGTATAGACAGTTAGGCTGCTTATGACAACGTGACGGGGTAGCCCAAATAGCGCATTGCCTTTAATGAACAAAAGGCGTAAATGGGCGAGAATTTCGG > NC_002947/4739050‑4739342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |