New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4963777	33 (0.600)	3 (0.060)	3/242	NT	9.8%	intergenic (‑123/+105)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	= 4963829	24 (0.460)					intergenic (‑175/+53)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ

CGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4963677‑4963777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgccTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAATCCTACGTCAAACCCAAACCCCCATCTCCGGCACGGCTATTGCTACACCGCTGGCAACACACCGTTTTA  <  NC_002947/4963829‑4963682                                                                                                                                                                                                                                                           CGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAGGACCGAGAAGGGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAA                                                                                                       >  7:81763/1‑148        tAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGGTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGC                                                                                               <  1:127987/148‑1           CGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAGGACCGAGAAGGGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAA                                                                                            <  8:81763/149‑1                                                                                                  CGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAATCCTACGTCAAACCCAAACCCCCATCTCCGGCACGGCTATTGCTACACCGCTGGCAACACACCGT      <  8:85085/148‑1                                                                                                     CTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAATCCTACGTCAAACCCAAACCCCCATCTCCGGCACGGCTATTGCTACACCGCTGGCACCACACCGTTTTA  >  3:17464/1‑149                                                                                                                                                                                                                                                           CGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4963677‑4963777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgccTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAATCCTACGTCAAACCCAAACCCCCATCTCCGGCACGGCTATTGCTACACCGCTGGCAACACACCGTTTTA  <  NC_002947/4963829‑4963682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.