New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4963777	33 (0.600)	3 (0.060)	3/242	NT	9.8%	intergenic (‑123/+105)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	= 4963829	24 (0.460)					intergenic (‑175/+53)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ

TAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCA  >  NC_002947/4963682‑4963975                                                                                                                                                    |                                                                                                                                                   tAAAACGGTGTGGTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAg                                                                                                                                                   >  3:17464‑M2/1‑148 (MQ=255)     aCGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcg                                                                                                                                                <  8:85085‑M2/148‑5 (MQ=255)         tgtgtTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTT‑GGCTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAcc                                                                                                                                          >  6:52334/1‑149 (MQ=255)               gCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGc                                                                                                                                      <  1:182777/148‑1 (MQ=255)                    cGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAAc                                                                                                                                <  7:177053/149‑1 (MQ=255)                        gtAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACgtgc                                                                                                                            >  2:197304/1‑146 (MQ=255)                           gCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCg                                                                                                                                       >  8:239001/1‑135 (MQ=255)                           gCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCg                                                                                                                                       <  7:239001/135‑1 (MQ=255)                                  ccGTGCCGGAGATGGGGGTTTGGGGTGGACGGAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGc                                                                                                                  <  2:299328/149‑1 (MQ=255)                                     tGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGaa                                                                                                               >  2:122557/1‑149 (MQ=255)                                                ggggTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGccc                                                                                                     <  1:96082/148‑1 (MQ=255)                                                      tgggtttgACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACAt                                                                                               <  7:85085/148‑1 (MQ=255)                                                         gtttgACGTAGGATTGGGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAt                                                                                           <  1:122557/149‑1 (MQ=255)                                                              aCGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAtcctcc                                                                                      <  4:325387/149‑1 (MQ=255)                                                              aCGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAtcctc                                                                                       <  5:52334/148‑1 (MQ=255)                                                               cGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCg                                                                                     >  5:83237/1‑149 (MQ=255)                                                                   ggATTGCGTTAAGACCGAGAAGGGTTCGCCGTGATTTTTGTTGTGCCGCGGAGATCGATCGCTGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTg                                                                                 <  5:150061/149‑1 (MQ=255)                                                                                           ttCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcgaacccttctcggtcctaacgcaatcctacgtcaaacccaaacccccatctccggcacggctattgctacaccgctggcaacacaccg                                                         <  8:81763‑M2/149‑92 (MQ=255)                                                                                              gCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcgaacccttctcggtcttaacgcaatcctacgtcaaccccaaacccccatctccggcacggctattgctacaccgctggcaacacaccgtta                                                      <  1:127987‑M2/149‑95 (MQ=255)                                                                                                      ttttGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcgaacccttctcggtcctaacgcaatcctacgtcaaacccaaacccccatctccggcacggctattgctacaccgctggcaacacaccgttttatgacg                                               >  7:81763‑M2/1‑47 (MQ=255)                                                                                                        ttgttgTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTgcg                                             >  4:177360/1‑148 (MQ=255)                                                                                                               gCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTggcggc                                                             <  2:153963/125‑1 (MQ=255)                                                                                                               gCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTggcggc                                                             >  1:153963/1‑125 (MQ=255)                                                                                                                       gaTCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGGGCATTTTCTCGACCAgg                             >  3:173984/1‑149 (MQ=255)                                                                                                                                   cccAAACAAAAACCTCTAGTCGAACACCCCGCCCAAACTCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGc                   <  2:114318/147‑1 (MQ=255)                                                                                                                                   cccAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACACAGCCCAAACAACAATCCTCCGCCTGCTCCTCACCGCAATGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTAAGGc                   >  1:114318/1‑147 (MQ=255)                                                                                                                                     caaacaaaAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGaa                >  8:315377/1‑148 (MQ=255)                                                                                                                                         caaaAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGc           <  3:177360/149‑1 (MQ=255)                                                                                                                                          aaaaaCCTCAAGGCGAACACCCCGCCCAAACGGAAGCCCCAAGTCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGc                   <  8:191155/140‑1 (MQ=255)                                                                                                                                          aaaaaCCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGCCGAACACCCAGCCCAAACAACAATCCTCCGCCTGGTCCTCACCCCCCTGGCGGCTCATGCCGTACATGCGCATTTACTCGACCAGGGTGGTACGGc                   >  7:191155/1‑140 (MQ=255)                                                                                                                                                  cAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCa  <  6:83237/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCA  >  NC_002947/4963682‑4963975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.