New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4963777	33 (0.600)	3 (0.060)	3/242	NT	9.8%	intergenic (‑123/+105)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	= 4963829	24 (0.460)					intergenic (‑175/+53)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ

ATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGT  >  NC_002947/4963633‑4963925                                                                                                                                                 |                                                                                                                                                     aTACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTTCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGa                                                                                                                                                  <  8:27638/149‑1 (MQ=255) aTACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGt                                                                                                                                                    >  7:27638/1‑147 (MQ=255)   aCGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGt                                                                                                                                                >  2:96082/1‑149 (MQ=255)    cGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGtt                                                                                                                                               <  8:325384/149‑1 (MQ=255)        ggcggcCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTttg                                                                                                                                            <  3:260745/148‑1 (MQ=255)         gcggcCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTttgtt                                                                                                                                          <  3:188686/149‑1 (MQ=255)           ggcCTGTGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTtgttgt                                                                                                                                        <  3:258405/149‑1 (MQ=255)             ccTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGc                                                                                                                                      >  8:177053/1‑149 (MQ=255)             ccTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGc                                                                                                                                      <  3:84847/149‑1 (MQ=255)                        gTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATc                                                                                                                            <  7:43231/148‑1 (MQ=255)                           ctctctCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCg                                                                                                                                                     >  1:97551/1‑120 (MQ=255)                           ctctctCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCg                                                                                                                                                     <  2:97551/120‑1 (MQ=255)                            tctctcGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAgcg                                                                                                                       >  3:325387/1‑149 (MQ=255)                                      ggCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCcaaac                                                                                                             <  8:319411/149‑1 (MQ=255)                                             cGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAGGACCGAGAAGGGTTCGCCttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaa                                                                                                       >  7:81763‑M1/1‑101 (MQ=255)                                             cGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGcc                                                                                                                                     <  3:278506/118‑1 (MQ=255)                                             cGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGcc                                                                                                                                     >  4:278506/1‑118 (MQ=255)                                                  tAAAACGGTGTGGTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAg                                                                                                 >  3:17464‑M2/1‑148 (MQ=255)                                                    taacGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGGTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggc                                                                                               <  1:127987‑M1/148‑56 (MQ=255)                                                     aaCGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGcgcc                                                                                                                     >  1:117067/1‑126 (MQ=255)                                                     aaCGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGcgcc                                                                                                                     <  2:117067/126‑1 (MQ=255)                                                      aCGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcg                                                                                              <  8:85085‑M2/148‑5 (MQ=255)                                                       cGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAGGACCGAGAAGGGTTCGCCttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaa                                                                                            <  8:81763‑M1/149‑59 (MQ=255)                                                          tgtgtTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTT‑GGCTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAcc                                                                                        >  6:52334/1‑149 (MQ=255)                                                                gCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGc                                                                                    <  1:182777/148‑1 (MQ=255)                                                                 ccAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCa                                                                                                   <  5:36101/132‑1 (MQ=255)                                                                 ccAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCa                                                                                                   >  6:36101/1‑132 (MQ=255)                                                                     cGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAAc                                                                              <  7:177053/149‑1 (MQ=255)                                                                         gtAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACgtgc                                                                          >  2:197304/1‑146 (MQ=255)                                                                            gCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCg                                                                                     >  8:239001/1‑135 (MQ=255)                                                                            gCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCg                                                                                     <  7:239001/135‑1 (MQ=255)                                                                                   ccGTGCCGGAGATGGGGGTTTGGGGTGGACGGAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGc                                                                <  2:299328/149‑1 (MQ=255)                                                                                      tGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGaa                                                             >  2:122557/1‑149 (MQ=255)                                                                                         cGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAgc                                                                                                                        >  5:104091/1‑87 (MQ=255)                                                                                         cGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAgc                                                                                                                        <  6:104091/87‑1 (MQ=255)                                                                                                 ggggTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGccc                                                   <  1:96082/148‑1 (MQ=255)                                                                                                       tgggtttgACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACAt                                             <  7:85085/148‑1 (MQ=255)                                                                                                          gtttgACGTAGGATTGGGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAt                                         <  1:122557/149‑1 (MQ=255)                                                                                                               aCGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAtcctcc                                    <  4:325387/149‑1 (MQ=255)                                                                                                               aCGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAtcctc                                     <  5:52334/148‑1 (MQ=255)                                                                                                                cGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCg                                   >  5:83237/1‑149 (MQ=255)                                                                                                                    ggATTGCGTTAAGACCGAGAAGGGTTCGCCGTGATTTTTGTTGTGCCGCGGAGATCGATCGCTGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTg                               <  5:150061/149‑1 (MQ=255)                                                                                                                                            ttCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcgaacccttctcggtcctaacgcaatcctacgtcaaacccaaacccccatctccggcacggctattgctacaccgctggcaacacaccg       <  8:81763‑M2/149‑92 (MQ=255)                                                                                                                                              cGCCttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaacccttctcggtcttaacgcaatcctacgtcaaacccaaacccccatctccggcacggctattgctacaccgctggcaacacaccgt      <  8:85085‑M1/148‑145 (MQ=255)                                                                                                                                               gCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAggcgaacccttctcggtcttaacgcaatcctacgtcaaccccaaacccccatctccggcacggctattgctacaccgctggcaacacaccgtta    <  1:127987‑M2/149‑95 (MQ=255)                                                                                                                                                 cttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaacccttctcggtcttaacgcaatcctacgtcaaacccaaacccccatctccggcacggctattgctacaccgctggcaccacaccgtttta  >  3:17464‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     ATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGT  >  NC_002947/4963633‑4963925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.