New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4990033	44 (0.790)	4 (0.080)	4/242	NT	8.1%	coding (1099/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990061	49 (0.940)					coding (1071/1242 nt)	PP_4399	glutamine synthetase

TTGTGTCGCGCTCAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4989879‑4990033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCGCAGCACGCTGGCGCGGGAACTGTTCGGCAGCGAGTTCATCGAAGGCTACATTGCCAGCAAGACCCTTGAGCTGAGCGATTTCTTCGACGAGATCACACCGTGGGAGCG  <  NC_002947/4990061‑4989915                                                                                                                                                                                                                                                                                                                 TTGTGTCGCGCTCAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTT                                                                                                                                                           >  5:285532/1‑149    tggCGCGCTCAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGGTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGA                                                                                                                                                         <  4:92312/145‑1    TGTCGCGCTCAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCCTTTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGA                                                                                                                                                         <  1:85132/149‑1             CAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCTGCCGTG                                                                                                                                               >  6:306140/1‑149                                        TCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCT                                                                                                                    >  7:179206/1‑149                                            ACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAG                                                                                                                <  5:306140/149‑1                                              GGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCG                                                                                                              <  8:179206/149‑1                                                                                                                                                       GAGCCTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCGCAGCACGCTGGCGCGGGAACTGTTCGGCAGCGAGTTCATCGAAGGCTACATTGCCAGCAAGACCCTTGAGCTGAGC                                  <  3:46002/121‑1                                                                                                                                                       GAGCCTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCGCAGCACGCTGGCGCGGGAACTGTTCGGCAGCGAGTTCATCGAAGGCTACATTGCCAGCAAGACCCTTGAGCTGAGC                                  >  4:46002/1‑121                                                                                                                                                           CTGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCGCAGCACGCTGGCGCGGGAACTGTTCGGCAGCGAGTTCATCGAAGGCTACATTGCCAGCAAGACCCTTGAGCTGAGCGATTTCTTCGACGAGATCACACCGTGGGAGCG  >  8:240261/1‑149                                                                                                                                                                                                                                                                                                                 TTGTGTCGCGCTCAGGCCTGTGCCGCCAGGACCCGACGCTCCCACGGTGTGATCTCGTCGAAGAAATCGCTCAGCTCAAGGGTCTTGCTGGCAATGTAGCC‑TTCGATGAACTCGCTGCCGAACAGTTCCCGCGCCAGCGTGCTGCGCTTGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4989879‑4990033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctGCCGTGCACGCTGCACGCGGCCCTTGAAAGGCTCAAGCGCAGCACGCTGGCGCGGGAACTGTTCGGCAGCGAGTTCATCGAAGGCTACATTGCCAGCAAGACCCTTGAGCTGAGCGATTTCTTCGACGAGATCACACCGTGGGAGCG  <  NC_002947/4990061‑4989915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.