New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5244707	46 (0.830)	3 (0.060)	3/248	NT	5.7%	coding (114/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5244765	55 (1.030)					coding (172/834 nt)	hmgR	Hmg transcriptional repressor

ATAAAGGCGACACGATAAATCCGGAACCTCCCCTCCCATGGCCAAAGCCAGCTCCCCCACCGACACCGGCAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244557‑5244707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGACGTCGAGGGTGAGAGTTCTGCGAGGGCCTTGAGGATGTCGGTGCCGACTTCCGCCGAGCGGACCTTCTGCTTGCCGGTGTC  <  NC_002947/5244765‑5244618                                                                                                                                                                                                                                                                                                             ATAAAGGCGACACGATAAATCCGGAACCTCCCCTCCCATGGCCAAAGCCAGCTCCCCCACCGACACCGGCAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTAT                                                                                                                                                        >  2:59134/1‑149  TAAAGGCGACACGATAAATCCGGAACCTCCCCTCCCATGGCCAAAGCCAGCTCCCCCACCGACACCGGCAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTAT                                                                                                                                                        >  5:48421/1‑148                                                       CCCCACCGACACCGGCAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTATCAGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGC                                                                                                  >  4:322171/1‑149                                                                      CAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTATCAGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGA                                                                                   <  3:322171/149‑1                                                                       AAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGATCTCTCACCCTCGACGTCACTATCAGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGAC                                                                                  <  8:290811/149‑1                                                                                                                                                     TCAGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGACGTCGAGGGTGAGAGTTCTGCGAGGGCCTTGAGGATGTCGGTGCCGACTTCCGCCGAGCGGACCTTCTGCTTGCCGGTG    >  2:73545/1‑149                                                                                                                                                       AGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGACGTCGAGGGTGAGAGTTCTGCGAGGGCCTTGAGGATGTCGGTGCCGACTTCTGCCGAGCGGACCTTCTGCTTGCCGGTGTC  >  5:74545/1‑149                                                                                                                                                       AGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGACGTCGAGGGTGAGAGTTCTGCGAGGGCCTTGAGGATGTCGGTGCCGACTTCCGCCGAGCGGACCTTCTGCTTGCCGGTGTC  >  6:48421/1‑149                                                                                                                                                                                                                                                                                                             ATAAAGGCGACACGATAAATCCGGAACCTCCCCTCCCATGGCCAAAGCCAGCTCCCCCACCGACACCGGCAAGCAGAAGGTCCGCTCGGCGGAAGTCGGCACCGACATCCTCAAGGCCCTCGCAGAACTCTCACCCTCGACGTCACTATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244557‑5244707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaGCGCCTGCAGGTAGCGATGCACTTTGCTCGCAGGCATCTGCACGTGCTCGGCCAGGCGTGATAGTGACGTCGAGGGTGAGAGTTCTGCGAGGGCCTTGAGGATGTCGGTGCCGACTTCCGCCGAGCGGACCTTCTGCTTGCCGGTGTC  <  NC_002947/5244765‑5244618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.