New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	43 (0.780)	4 (0.090)	4/208	NT	12.7%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	20 (0.450)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

CAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5671783‑5671615 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  >  NC_002947/5671700‑5671831                                                                                                                                                                                                                                                                                                                CAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCG                                                                                                                                                          >  2:303589/1‑149    GATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGG                                                                                                                                                       <  6:342792/149‑1            ACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCC                                                                                                                                               <  2:62099/149‑1                ACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCCTGCCCGCGAACACCGGCGAACCCGG‑TGCCAACGATCGGGTTGCTCTCTTAGCGGGCACGCCCGCTC                                                                                                                                           >  5:28722/1‑149                 CGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCTAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                          <  4:57221/149‑1                    ggtATATGTGGCTTGGCGGTTGTTTACGCGCTCGGCGGGTGTACGGTAATGGCATGCATTATCGATGTGGGAGCGGGGGGGCCGGCTAACACCGGCGAAGCGGG‑TGCCAACGATGGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCAC                                                                                                                                       <  6:28722/146‑1                                       GAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                          <  5:269680/127‑1                                       GAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                          >  6:269680/1‑127                                                                              TTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGCTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                          <  1:69164/89‑1                                                                              TTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                          >  2:69164/1‑88                                                                                           cggggcCGTGCCCGCAAACACCGGCCAACCGGG‑TGCAAACGTTCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTC                                                                <  3:224/143‑1                                                                                              GGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGT                                                             >  7:106735/1‑149                                                                                                     CCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGC                                                                                                  <  7:269124/105‑1                                                                                                     CCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGC                                                                                                  >  8:269124/1‑105                                                                                                                                                          GCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  <  3:57221/149‑1                                                                                                                                                          GCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  <  8:106735/149‑1                                                                                                                                                                                                                                                                                                                CAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGG‑TGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5671783‑5671615 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  >  NC_002947/5671700‑5671831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.