New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	43 (0.780)	4 (0.090)	4/208	NT	12.7%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	20 (0.450)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATC  >  NC_002947/5671470‑5671762                                                                                                                                                    |                                                                                                                                                     cGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgtg                                                                                                                                                   <  8:58188/149‑1 (MQ=255)   tGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGCTCCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgtg                                                                                                                                                   <  1:286587/149‑1 (MQ=255)   tGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTggg                                                                                                                                                 <  2:242013/149‑1 (MQ=255)            aGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGt                                                                                                                                        <  6:143541/149‑1 (MQ=255)                gCTGCGTCAGTGCCTGCTCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGc                                                                                                                                          <  2:150449/143‑1 (MQ=255)                gCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGc                                                                                                                                          >  1:150449/1‑143 (MQ=255)                gCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGccc                                                                                                                                    >  3:141675/1‑149 (MQ=255)                caggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGc                                                                                                                                      <  8:106735‑M1/17‑1 (MQ=255)                caggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGc                                                                                                                                      <  3:57221‑M1/17‑1 (MQ=255)                      tCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcgcg                                                                                                                                 >  3:224158/1‑146 (MQ=255)                         gTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagaga                                                                                                                           <  1:197110/149‑1 (MQ=255)                            ccTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGc                                                                                                                         <  6:360180/148‑1 (MQ=255)                                  ccATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGa                                                                                                                  <  7:282256/149‑1 (MQ=255)                                  ccATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGa                                                                                                                  >  3:188648/1‑149 (MQ=255)                                       cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGtt                                                                                                            <  4:141675/149‑1 (MQ=255)                                             tACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGc                                                                                                                                          <  6:356703/114‑1 (MQ=255)                                             tACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGc                                                                                                                                          >  5:356703/1‑114 (MQ=255)                                                ggCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGCAGAGAGCAACCCGCG‑CGTTGGCCCCCGc                                                                                                   >  6:230247/1‑149 (MQ=255)                                                   tATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTc                                                                                                >  3:233436/1‑149 (MQ=255)                                                       gCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCg                                                                                            <  8:140683/149‑1 (MQ=255)                                                           ggCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGc                                                                                                                                      >  5:172232/1‑104 (MQ=255)                                                           ggCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGc                                                                                                                                      <  6:172232/104‑1 (MQ=255)                                                            gCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGtt                                                                                       <  3:281505/149‑1 (MQ=255)                                                                gcggcgCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGAGGTCTTGTGGGAGCGGGCGTTCCCGCGAAGAGAGAAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTcgct                                                                                   >  7:246942/1‑148 (MQ=255)                                                                 cggcgCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt                                                                                                                                                    <  3:314601/84‑1 (MQ=255)                                                                 cggcgCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt                                                                                                                                                    >  4:314601/1‑84 (MQ=255)                                                                     gcAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGGGGGGCCCCGGAGAGGGGAACCCCCTACGTTGG‑ACCCGCGTGGCCCGGGTTAGCGGGccc                                                                              >  4:196840/1‑147 (MQ=255)                                                                     gcAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCAc                                                                              <  4:224158/149‑1 (MQ=255)                                                                       aaGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                                                            <  4:233436/149‑1 (MQ=255)                                                                       aaGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                                                            >  1:108068/1‑149 (MQ=255)                                                                           acagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGccc                                                                          >  7:106735‑M1/74‑149 (MQ=255)                                                                              gacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAA‑CGTTTGCACCCGGTTGGCCGGTGTTTGCgggcacggccccg                                                                       <  3:224‑M1/79‑7 (MQ=255)                                                                               cGAG‑‑GCGCATCTGCTGCGATCCACCCACGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTcc                                                                     <  4:188648/148‑1 (MQ=255)                                                                                              ctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGCAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                         <  5:230247/147‑1 (MQ=255)                                                                                                 cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCgg                                                                                                    >  5:256652/1‑101 (MQ=255)                                                                                                 cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCgg                                                                                                    <  6:256652/101‑1 (MQ=255)                                                                                                    tCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGtt                                                                                                            <  5:280386/90‑1 (MQ=255)                                                                                                    tCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGtt                                                                                                            >  6:280386/1‑90 (MQ=255)                                                                                                         ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGCAGAGAGCCACCCGAT‑CGTTTGCACCGGCTTCGCCGGTGTTAGCGGGGACGCCCGCACCCCCATCGATAattcatgcacgta                                              >  1:303589/1‑142 (MQ=37)                                                                                                           aaGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCg                                           >  7:174867/1‑148 (MQ=255)                                                                                                                tGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcg                                                                                                                                   <  6:108540/56‑1 (MQ=255)                                                                                                                tGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcg                                                                                                                                   >  5:108540/1‑56 (MQ=255)                                                                                                                gctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCggg                                                                                 <  7:269124‑M1/69‑1 (MQ=255)                                                                                                                gctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCggg                                                                                 >  8:269124‑M1/37‑105 (MQ=255)                                                                                                                   tgtgCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGc                                  <  2:108068/149‑1 (MQ=255)                                                                                                                   tgtgCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCCGCTTCGCCGGTGTTAGCGGGCACGCCCGCGCCCCCAACGATAATTCAAGCCTTTAACCGACACCCGc                                  >  2:205893/1‑149 (MQ=25)                                                                                                                         cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAt                                                                <  3:123977/113‑1 (MQ=255)                                                                                                                          gCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcgc                           <  8:174867/149‑1 (MQ=255)                                                                                                                                   aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcgc                           <  7:163824/140‑1 (MQ=255)                                                                                                                                   aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcgc                           >  8:163824/1‑140 (MQ=255)                                                                                                                                           gcgcGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCAt            <  1:205893/147‑1 (MQ=255)                                                                                                                                            cgcgGTCTTGTGGGTGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGc          <  3:196840/148‑1 (MQ=255)                                                                                                                                             gcgGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCca        <  8:246942/149‑1 (MQ=255)                                                                                                                                                   ttGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATc  >  8:306558/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAG‑‑GCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGAT‑CGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATC  >  NC_002947/5671470‑5671762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.