New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	43 (0.780)	4 (0.090)	4/208	NT	12.7%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	20 (0.450)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

CTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  >  NC_002947/5671561‑5671831                                                                                                                                             |                                                                                                                                        ctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGCAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                                                                                                  <  5:230247/147‑1 (MQ=255)            ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGCAGAGAGCCACCCGATCGTTTGCA‑CCGGCTTCGCCGGTGTTAGCGGGGACGCCCGCACCCCCATCGATAattcatgcacgta                                                                                                                       >  1:303589/1‑142 (MQ=37)              aaGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCg                                                                                                                    >  7:174867/1‑148 (MQ=255)                      tgtgCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGc                                                                                                           <  2:108068/149‑1 (MQ=255)                      tgtgCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCCGCTTCGCCGGTGTTAGCGGGCACGCCCGCGCCCCCAACGATAATTCAAGCCTTTAACCGACACCCGc                                                                                                           >  2:205893/1‑149 (MQ=25)                            cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAt                                                                                                                                         <  3:123977/113‑1 (MQ=255)                             gCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcg‑c                                                                                                   <  8:174867/149‑1 (MQ=255)                                      aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcg‑c                                                                                                   >  8:163824/1‑140 (MQ=255)                                      aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgcg‑c                                                                                                   <  7:163824/140‑1 (MQ=255)                                              gcgcGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCAt                                                                                 <  1:205893/147‑1 (MQ=255)                                               cgcgGTCTTGTGGGTGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGc                                                                               <  3:196840/148‑1 (MQ=255)                                                gcgGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCca                                                                             <  8:246942/149‑1 (MQ=255)                                                      ttGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATc                                                                       >  8:306558/1‑149 (MQ=255)                                                        GTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCCATCGTTGGCA‑CCCGCTTCGCCGGTGTTAGCCGGCCCCCCCGCTCCCACATCGATAATGCATGCCATTACCGTACACCCGCCGAGCG‑C‑‑‑GTAAACAACCGCCAAGCcacatatacc                                                                     <  6:28722‑M1/149‑4 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCAGCCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATaa                                                                                                                                   <  1:69164‑M1/89‑1 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATaa                                                                                                                                   >  2:69164‑M1/1‑88 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAAtctc                                                                                        <  5:269680‑M1/127‑1 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAAtctc                                                                                        >  6:269680‑M1/1‑127 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTAGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCg                                                                  <  4:57221‑M1/149‑1 (MQ=255)                                                            GAGCGGGCGTGCCCGCTAAGAGAGCAACCCGATCGTTGGCA‑CCGGGTTCGCCGGTGTTCGCGGGCAGGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGt                                                                 >  5:28722‑M1/1‑149 (MQ=255)                                                              cggggccgtgcccgcaaacaccggccaaccgggtgcaaacgttcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTc                                                                <  3:224‑M2/70‑1 (MQ=255)                                                                GGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGt                                                             <  2:62099‑M1/149‑1 (MQ=255)                                                                 gggcgtgcccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGt                                                             >  7:106735‑M2/77‑149 (MQ=255)                                                                        cccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                                                                      >  8:269124‑M2/70‑105 (MQ=255)                                                                        cccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                                                                      <  7:269124‑M2/36‑1 (MQ=255)                                                                        CCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                     <  6:342792‑M1/149‑1 (MQ=255)                                                                           CGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctg                                                  >  2:303589‑M1/1‑149 (MQ=255)                                                                               gagagCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAatgc                                                                                                                                <  8:45044/71‑1 (MQ=255)                                                                               gagagCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAatgc                                                                                                                                >  7:45044/1‑71 (MQ=255)                                                                                 gagCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTTCCGTATACCCGCCGAGCGTCTGGGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgct                                                >  1:115602/1‑149 (MQ=37)                                                                                         cGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                    >  5:91930/1‑149 (MQ=255)                                                                                          gATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                    >  2:242403/1‑148 (MQ=255)                                                                                           aTCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                    >  3:50693/1‑147 (MQ=255)                                                                                                       cGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGct                       <  7:306558/149‑1 (MQ=255)                                                                                                             cGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTggg                  <  1:62099/148‑1 (MQ=255)                                                                                                                   tgtTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGc           <  1:242403/149‑1 (MQ=255)                                                                                                                            gcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTg  <  8:106735‑M2/132‑1 (MQ=255)                                                                                                                            gcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTg  <  3:57221‑M2/132‑1 (MQ=255)                                                                                                                                             |                                                                                                                                        CTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCA‑CCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCG‑C‑‑‑GTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG  >  NC_002947/5671561‑5671831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.