New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5682683 =	54 (0.980)	4 (0.080)	4/244	NT	7.4%	coding (4210/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5682711 =	48 (0.910)					coding (4182/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

CTGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5682833‑5682683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  >  NC_002947/5682711‑5682856                                                                                                                                                                                                                                                                                                             CTGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGC                                                                                                                                                       <  2:82833/148‑1  TGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGACGAGCTTGCAGCGTGCTACCAGCTGG‑A‑CTAGCCG                                                                                                                                                     >  5:49226/1‑149    ATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGCCG                                                                                                                                                     <  4:283496/147‑1             CCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGG                                                                                                                                            <  7:330949/147‑1                                                                                                                     CGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATT                                                                                         >  5:318262/1‑94                                                                                                                     CGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATT                                                                                         <  6:318262/94‑1                                                                                                                             CGGCGTGCTACCAGCTGG‑A‑CTCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCA                          <  8:330949/149‑1                                                                                                                                                     GCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTG    >  7:65123/1‑149                                                                                                                                                       CGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  <  1:81626/149‑1                                                                                                                                                       CGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  >  3:283463/1‑149                                                                                                                                                       CGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGA                                         <  5:354116/110‑1                                                                                                                                                       CGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGA                                         >  6:354116/1‑110                                                                                                                                                                                                                                                                                                             CTGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5682833‑5682683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  >  NC_002947/5682711‑5682856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.