New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5682683 =	54 (0.980)	4 (0.080)	4/244	NT	7.4%	coding (4210/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5682711 =	48 (0.910)					coding (4182/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

GGCCTGGATGGCGAACGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGG  >  NC_002947/5682537‑5682821                                                                                                                                                   |                                                                                                                                             cgcagggcaagggggcgcgtttcctgatccgcctgccgttcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcg                                                                                                                                            <  1:81626‑M1/3‑1 (MQ=255) cgcagggcaagggggcgcgtttcctgatccgcctgccgttcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcg                                                                                                                                            >  3:283463‑M1/147‑149 (MQ=255)   ccTGGATGGCGAACGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCgcggc                                                                                                                                          <  8:144996/149‑1 (MQ=255)   cagggcaagggggcgcgtttcctgatccgcctgccgttcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcggc                                                                                                                                          >  7:65123‑M1/145‑149 (MQ=255)             gAACGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCt                                                                                                                              >  5:128928/1‑149 (MQ=255)              aaCGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGGTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTg                                                                                                                             >  1:252474/1‑149 (MQ=255)                cGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGt                                                                                                                           <  1:200656/149‑1 (MQ=255)                cGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGt                                                                                                                           <  6:177105/149‑1 (MQ=255)                    tGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCa                                                                                                                       >  2:42918/1‑149 (MQ=255)                    tGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGAGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGAGCGTATTCGTGGCCGGCATAGACATCGCGCGGCGAG‑T‑CCAGCTGGTAGCa                                                                                                                       >  6:325516/1‑149 (MQ=255)                      cTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCAcg                                                                                                                     >  8:24462/1‑149 (MQ=255)                       tCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCAcgc                                                                                                                    >  1:339460/1‑149 (MQ=255)                        ccTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCAcgcc                                                                                                                   >  3:118763/1‑149 (MQ=255)                         tgatccgcctgccgttcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttGCGGCGAG‑T‑CCAGCTGGTAGCAcgccg                                                                                                                  <  8:330949‑M1/27‑1 (MQ=255)                         cTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCAcgccg                                                                                                                  >  2:236000/1‑149 (MQ=255)                            ggAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCa                                                                                                                <  7:24462/148‑1 (MQ=255)                             gAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCCGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGa                                                                                                                                        <  6:303591/125‑1 (MQ=255)                                   aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                          >  7:118128/1‑147 (MQ=255)                                   aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                          <  8:118128/147‑1 (MQ=255)                                   aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCACGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCgg                                                                                                         >  8:140038/1‑148 (MQ=255)                                    ccAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCgg                                                                                                         >  7:104226/1‑147 (MQ=255)                                        tcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcg                                                                                                                                            <  5:354116‑M1/3‑1 (MQ=255)                                        tcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcg                                                                                                                                            >  6:354116‑M1/108‑110 (MQ=255)                                                       cACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑A‑ACAGCTGTTAGCACGCCGAATCATCGGCAGGTGGCAGCCGGACGATGc                                                                                    >  4:226194/1‑149 (MQ=255)                                                          gCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCt                                                                                 <  2:252474/149‑1 (MQ=255)                                                              tGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGAt                                                                             >  2:81626/1‑149 (MQ=255)                                                                ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGa                                                                              <  2:339460/146‑1 (MQ=255)                                                                ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGa                                                                              <  1:42918/146‑1 (MQ=255)                                                                ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGAt                                                                             <  6:128928/147‑1 (MQ=255)                                                                ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                           <  4:118763/149‑1 (MQ=255)                                                                  ccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCCCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                         >  3:40986/1‑149 (MQ=255)                                                                    agcagcGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTAtt                                                                       <  8:104226/149‑1 (MQ=255)                                                                              ggCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATg                                                             <  4:40090/149‑1 (MQ=255)                                                                                 ctatctggCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGTCACGCGGACGATGCCCTCGATGGTATTGAGCGTAATTGc                                                           <  1:91770/142‑1 (MQ=255)                                                                                    gCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                       >  1:231207/1‑149 (MQ=255)                                                                                        gCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGct                                                   >  8:175127/1‑149 (MQ=255)                                                                                        gCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAC‑T‑CCAGCTGGTAGCACCCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCgagatcg                                                    >  2:91770/1‑142 (MQ=255)                                                                                        aatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                          <  6:318262‑M1/35‑1 (MQ=255)                                                                                        aatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                          >  5:318262‑M1/60‑94 (MQ=255)                                                                                          cTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                         <  3:131493/125‑1 (MQ=255)                                                                                          cTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                         >  4:131493/1‑125 (MQ=255)                                                                                           ttGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGaa                                                               >  1:76654/1‑134 (MQ=255)                                                                                           ttGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGaa                                                               <  2:76654/134‑1 (MQ=255)                                                                                             gcagcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTc                                               <  6:291772/148‑1 (MQ=255)                                                                                              cagcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGc                                             >  8:189925/1‑149 (MQ=255)                                                                                               agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGc                                                                                                        <  8:301920/89‑1 (MQ=255)                                                                                               agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGc                                                                                                        >  7:301920/1‑89 (MQ=255)                                                                                               agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGctct                                                 >  6:159607/1‑144 (MQ=255)                                                                                               agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGctct                                                 <  5:159607/144‑1 (MQ=255)                                                                                                    cTCGGCCATGTATCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATTGCGTATTGCTCTTCGCCCAGGt                                       <  3:226194/149‑1 (MQ=255)                                                                                                    cTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                       <  1:161796/133‑1 (MQ=255)                                                                                                    cTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                       >  2:161796/1‑133 (MQ=255)                                                                                                           aGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCTGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCAt                                <  5:325516/149‑1 (MQ=255)                                                                                                              tAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCa                              <  7:140038/148‑1 (MQ=255)                                                                                                                gcgcAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAgc                            <  2:256890/148‑1 (MQ=255)                                                                                                                      cTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGt                     <  1:236000/149‑1 (MQ=255)                                                                                                                        cGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTg                                                     <  3:296337/115‑1 (MQ=255)                                                                                                                        cGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGAAGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTg                                                     >  4:296337/1‑115 (MQ=255)                                                                                                                         gTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                           <  4:308396/92‑1 (MQ=255)                                                                                                                         gTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                           >  3:308396/1‑92 (MQ=255)                                                                                                                          tATTCTTTGCTGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGGCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGAt                 <  7:220908/149‑1 (MQ=255)                                                                                                                            ttCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATc                <  7:175127/148‑1 (MQ=255)                                                                                                                                         tAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACgg  <  4:40986/149‑1 (MQ=255)                                                                                                                                           ccgagcttGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACgg  <  7:330949‑M1/139‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             GGCCTGGATGGCGAACGACTGCTCCTTGGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGG  >  NC_002947/5682537‑5682821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.