New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5682683 =	54 (0.980)	4 (0.080)	4/244	NT	7.4%	coding (4210/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5682711 =	48 (0.910)					coding (4182/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

GGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  >  NC_002947/5682564‑5682856                                                                                                                                                      |                                                                                                                                                  ggAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCa                                                                                                                                                   <  7:24462/148‑1 (MQ=255)        aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                                                             <  8:118128/147‑1 (MQ=255)        aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                                                             >  7:118128/1‑147 (MQ=255)        aCCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCACGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCgg                                                                                                                                            >  8:140038/1‑148 (MQ=255)         ccAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCgg                                                                                                                                            >  7:104226/1‑147 (MQ=255)           ccgttcaccgtgtcgatcaaccgtgcgctgatggtgcacctgggcgaagagcaatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttgcggcgagtccagctggtagcacgccgcAAGCTCgg                                                                                                                                            <  7:330949‑M2/8‑1 (MQ=255)                            cACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑A‑ACAGCTGTTAGCACGCCGAATCATCGGCAGGTGGCAGCCGGACGATGc                                                                                                                       >  4:226194/1‑149 (MQ=255)                               gCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCt                                                                                                                    <  2:252474/149‑1 (MQ=255)                                   tGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGAt                                                                                                                >  2:81626/1‑149 (MQ=255)                                     ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGa                                                                                                                 <  1:42918/146‑1 (MQ=255)                                     ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGa                                                                                                                 <  2:339460/146‑1 (MQ=255)                                     ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGAt                                                                                                                <  6:128928/147‑1 (MQ=255)                                     ccccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                                                              <  4:118763/149‑1 (MQ=255)                                       ccAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCCCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                                                            >  3:40986/1‑149 (MQ=255)                                         agcagcGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTAtt                                                                                                          <  8:104226/149‑1 (MQ=255)                                                   ggCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATg                                                                                                <  4:40090/149‑1 (MQ=255)                                                      ctatctggCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGTCACGCGGACGATGCCCTCGATGGTATTGAGCGTAATTGc                                                                                              <  1:91770/142‑1 (MQ=255)                                                         gCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                                                          >  1:231207/1‑149 (MQ=255)                                                             gCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGct                                                                                      >  8:175127/1‑149 (MQ=255)                                                             gCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAC‑T‑CCAGCTGGTAGCACCCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCgagatcg                                                                                       >  2:91770/1‑142 (MQ=255)                                                             aatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                                                             <  6:318262‑M1/35‑1 (MQ=255)                                                             aatacgccattccgctcaataccatcgagggcatcgtccgcgtgccacctgccgagcttGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCg                                                                                                                                             >  5:318262‑M1/60‑94 (MQ=255)                                                               cTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                                                            <  3:131493/125‑1 (MQ=255)                                                               cTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTa                                                                                                            >  4:131493/1‑125 (MQ=255)                                                                ttGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGaa                                                                                                  >  1:76654/1‑134 (MQ=255)                                                                ttGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGaa                                                                                                  <  2:76654/134‑1 (MQ=255)                                                                  gcagcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTc                                                                                  <  6:291772/148‑1 (MQ=255)                                                                   cagcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGc                                                                                >  8:189925/1‑149 (MQ=255)                                                                    agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGc                                                                                                                                           <  8:301920/89‑1 (MQ=255)                                                                    agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGc                                                                                                                                           >  7:301920/1‑89 (MQ=255)                                                                    agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGctct                                                                                    >  6:159607/1‑144 (MQ=255)                                                                    agcaACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGctct                                                                                    <  5:159607/144‑1 (MQ=255)                                                                         cTCGGCCATGTATCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATTGCGTATTGCTCTTCGCCCAGGt                                                                          <  3:226194/149‑1 (MQ=255)                                                                         cTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                                                          <  1:161796/133‑1 (MQ=255)                                                                         cTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAt                                                                                          >  2:161796/1‑133 (MQ=255)                                                                                aGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCTGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCAt                                                                   <  5:325516/149‑1 (MQ=255)                                                                                   tAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCa                                                                 <  7:140038/148‑1 (MQ=255)                                                                                     gcgcAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAgc                                                               <  2:256890/148‑1 (MQ=255)                                                                                           cTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGt                                                        <  1:236000/149‑1 (MQ=255)                                                                                             cGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTg                                                                                        <  3:296337/115‑1 (MQ=255)                                                                                             cGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGAAGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTg                                                                                        >  4:296337/1‑115 (MQ=255)                                                                                              gTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                                                              <  4:308396/92‑1 (MQ=255)                                                                                              gTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATgg                                                                                                              >  3:308396/1‑92 (MQ=255)                                                                                               tATTCTTTGCTGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGGCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGAt                                                    <  7:220908/149‑1 (MQ=255)                                                                                                 ttCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATc                                                   <  7:175127/148‑1 (MQ=255)                                                                                                              tAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACgg                                     <  4:40986/149‑1 (MQ=255)                                                                                                                ccgagcttGCGGCGTGCTACCAGCTGG‑A‑CTCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACgg                                     <  7:330949‑M1/139‑1 (MQ=255)                                                                                                                   cgagcttgcggcgtgctaccagctggactcgccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAtt                                                                                         <  6:318262‑M2/59‑1 (MQ=255)                                                                                                                   cgagcttgcggcgtgctaccagctggactcgccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTAtt                                                                                         >  5:318262‑M2/36‑94 (MQ=255)                                                                                                                         CGGCTAG‑T‑CCAGCTGGTAGCACGCTGCAAGCTCGTCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCa                          >  5:49226‑M1/1‑149 (MQ=255)                                                                                                                         CGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGAt                            <  4:283496‑M1/147‑1 (MQ=255)                                                                                                                           cggcgtgctaccagctggactcgccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCa                          <  8:330949‑M2/122‑1 (MQ=255)                                                                                                                           GCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAg                         <  2:82833‑M1/148‑1 (MQ=255)                                                                                                                                    cAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGAt                                                    <  2:341066/114‑1 (MQ=255)                                                                                                                                    cAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTAGATCGACACGGTGAACGGCAGGCGGATCAGGAAAcgcg                 >  2:27340/1‑149 (MQ=255)                                                                                                                                      gCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCa                                   >  8:47143/1‑129 (MQ=255)                                                                                                                                      gCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCa                                   <  7:47143/129‑1 (MQ=255)                                                                                                                                          gTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTg                                          <  1:262915/118‑1 (MQ=255)                                                                                                                                          gTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTg                                          >  2:262915/1‑118 (MQ=255)                                                                                                                                               aCGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGccc      >  3:170898/1‑149 (MQ=255)                                                                                                                                                 gccgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTg    >  7:65123‑M2/6‑149 (MQ=255)                                                                                                                                                   cgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGa                                         <  5:354116‑M2/107‑1 (MQ=255)                                                                                                                                                   cgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGa                                         >  6:354116‑M2/4‑110 (MQ=255)                                                                                                                                                   cgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTgcg  >  3:283463‑M2/4‑149 (MQ=255)                                                                                                                                                   cgcAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTgcg  <  1:81626‑M2/146‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GGAATGCACCAGCAGCACCGGCAACGGCACGCTCTGCCCCAGCAGCGCGGGGCGCGGCAGGCCTTGCAGCAACTCGCCCAGGTAGCGCAGCTCGTATTCGTGGCCGGCATAGACATAGCGCGGCGAG‑T‑CCAGCTGGTAGCACGCCGCAAGCTCGGCAGGTGGCACGCGGACGATGCCCTCGATGGTATTGAGCGGAATGGCGTATTGCTCTTCGCCCAGGTGCACCATCAGCGCACGGTTGATCGACACGGTGAACGGCAGGCGGATCAGGAAACGCGCCCCCTTGCCCTGCG  >  NC_002947/5682564‑5682856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.