New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5817718	69 (1.250)	4 (0.080)	4/236	NT	5.6%	coding (236/1011 nt)	pilT	twitching motility protein
	?	NC_002947	= 5817756	71 (1.390)					coding (198/1011 nt)	pilT	twitching motility protein

GAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5817561‑5817718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccggcaGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTGAGTGAGCTGGA  <  NC_002947/5817756‑5817613                                                                                                                                                                                                                                                                                                                 GAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAA                                                                                                                                                            >  3:308655/1‑149     ATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGC                                                                                                                                                        <  5:184362/149‑1      TCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGC‑ATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCG                                                                                                                                                      <  6:331006/149‑1        AAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCG                                                                                                                                                      <  8:102888/148‑1         AGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGG                                                                                                                                                     >  8:255372/1‑148                          GCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAA                                                                                                                                                            <  3:143626/124‑1                          GCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAA                                                                                                                                                            >  4:143626/1‑124                                                                           TGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGC                                                                                                    <  8:11811/131‑1                                                                           TGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGC                                                                                                    >  7:11811/1‑131                                                                              GCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGG                                                                                                       <  3:134781/125‑1                                                                              GCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGG                                                                                                       >  4:134781/1‑125                                                                                                                                                     AGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTGAGTGAG       <  7:273666/149‑1                                                                                                                                                      GCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTGAGTGAGC      >  4:308655/1‑149                                                                                                                                                      GCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTG             >  4:191441/1‑142                                                                                                                                                      GCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTG             <  3:191441/142‑1                                                                                                                                                       cggCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGGTGGAGTTGCCGGCGGTTGGGCGCTTTCGGCTTAACCTGTTTCGCCAGTTGAATGGCCCGGCGGGTACCTTTCGGACTGATCCCGGGGCGCATTGCGACGGTGAGTGAGC      <  1:47983/146‑1                                                                                                                                                          CGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCGAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGCCGGTGAGTGAGCTGGA  >  5:344086/1‑149                                                                                                                                                                                                                                                                                                                 GAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5817561‑5817718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccggcaGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGG‑CTGATCCCGGGGCGCATTGCGACGGTGAGTGAGCTGGA  <  NC_002947/5817756‑5817613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.