New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5817718	69 (1.250)	4 (0.080)	4/236	NT	5.6%	coding (236/1011 nt)	pilT	twitching motility protein
	?	NC_002947	= 5817756	71 (1.390)					coding (198/1011 nt)	pilT	twitching motility protein

AGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCG  >  NC_002947/5817591‑5817865                                                                                                                                 |                                                                                                                                                    aGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAACGTCCAttt                                                                                                                                >  3:143922/1‑149 (MQ=255)        aaCACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGcc                                                                                                                         >  1:164296/1‑149 (MQ=255)        aaCACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGc                                                                                                                          <  5:54050/148‑1 (MQ=255)         acacATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCAtt                                                                                                                                 <  7:165343/140‑1 (MQ=255)         acacATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCAtt                                                                                                                                 >  8:165343/1‑140 (MQ=255)                cGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGcc                                                                                                                  >  2:326026/1‑148 (MQ=255)                       tCCAGCTCACTCACCGGCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTCGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccg                                                                                                          >  5:344086‑M2/1‑144 (MQ=255)                           gCTCACTCACCGTCGCAATGCGCCCCGGGATCAGTCCGAAAGGTACCCGCCGGGCCATTCAACTGGCGAAACAGGTTAAGCCGAAAGCGCCCAACCGCCGGCAACTCCACCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccgccg                                                                                                       <  1:47983‑M2/149‑9 (MQ=255)                           gCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgc                                                                                                      >  4:308655‑M2/1‑140 (MQ=255)                            ctcactcaCCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgct                                                                                                     <  7:273666‑M2/149‑11 (MQ=255)                               actcacCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGCCGCTGAt                                                                                                  >  1:326247/1‑149 (MQ=255)                                 tcacCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCg                                                                                                >  2:35300/1‑149 (MQ=255)                                 tcacCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCg                                                                                                >  1:71530/1‑149 (MQ=255)                                  cacCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgc                                                                                                      <  3:191441‑M2/142‑10 (MQ=255)                                  cacCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgc                                                                                                      >  4:191441‑M2/1‑133 (MQ=255)                                   acCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGAAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGtt                                                                                              <  1:326026/149‑1 (MQ=255)                                     cGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCg                                                                                                                           <  8:217981/118‑1 (MQ=255)                                     cGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCg                                                                                                                           >  7:217981/1‑118 (MQ=255)                                       tCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                                           >  4:197243/1‑148 (MQ=255)                                       tCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                                           >  2:345875/1‑148 (MQ=255)                                         gCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCa                                                                                         <  4:143922/148‑1 (MQ=255)                                           aaTGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCa                                                                                      >  5:70683/1‑149 (MQ=255)                                           aaTGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGCCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCa                                                                                      >  1:358510/1‑149 (MQ=255)                                             tGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgc                                                                                                      <  8:11811‑M1/131‑48 (MQ=255)                                             tGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgc                                                                                                      >  7:11811‑M1/1‑84 (MQ=255)                                              gcgcCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGc                                                                                   >  3:168036/1‑149 (MQ=255)                                                gcCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccgg                                                                                                         >  4:134781‑M1/1‑81 (MQ=255)                                                gcCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccgg                                                                                                         <  3:134781‑M1/125‑45 (MQ=255)                                                gcCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                 <  4:168036/149‑1 (MQ=255)                                                gcCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTCCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                 >  4:24835/1‑149 (MQ=255)                                                  cccGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGc                                                                               >  7:248835/1‑149 (MQ=255)                                                    cGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCa                                                                             >  7:211434/1‑149 (MQ=255)                                                     gggATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCAt                                                                            <  7:255372/149‑1 (MQ=255)                                                            g‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                                      >  7:60055/1‑148 (MQ=255)                                                            g‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                                      >  6:210334/1‑148 (MQ=255)                                                               cGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                 <  5:117986/135‑1 (MQ=255)                                                               cGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                 >  6:117986/1‑135 (MQ=255)                                                               cGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGa                                                                    >  2:327291/1‑148 (MQ=255)                                                                  aaGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCaa                                                                <  6:70683/149‑1 (MQ=255)                                                                   aGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAg                                                               <  3:197243/149‑1 (MQ=255)                                                                   aGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAg                                                               <  1:327291/149‑1 (MQ=255)                                                                   aGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAg                                                               <  7:262831/149‑1 (MQ=255)                                                                     gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAgg                                                              >  3:42533/1‑148 (MQ=255)                                                                     gTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGc                                                             >  5:341797/1‑149 (MQ=255)                                                                        aCCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCAGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCAcc                                                          <  8:60055/149‑1 (MQ=255)                                                                         ccgccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCAccc                                                         >  1:9215/1‑149 (MQ=255)                                                                         ccgccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCAccc                                                         <  1:345875/149‑1 (MQ=255)                                                                           gccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTg                                                       <  2:71530/149‑1 (MQ=255)                                                                                gCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCaa                                                                >  5:86737/1‑135 (MQ=255)                                                                                gCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCaa                                                                <  6:86737/135‑1 (MQ=255)                                                                                 ccATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTgg                                                                                >  2:165629/1‑118 (MQ=255)                                                                                 ccATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTgg                                                                                <  1:165629/118‑1 (MQ=255)                                                                                   aTTCAACTGGCGAAACAGGTTCAGCCCAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCg                                                                                                                           <  1:164586/73‑1 (MQ=255)                                                                                   aTTCAACTGGCGAAACAGGTTCAGCCCAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCg                                                                                                                           >  2:164586/1‑73 (MQ=255)                                                                                      cAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggc                                             <  2:164296/148‑1 (MQ=255)                                                                                       aaCTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcgg                                           <  4:42533/149‑1 (MQ=255)                                                                                       aaCTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcgg                                           <  6:341797/149‑1 (MQ=255)                                                                                       aaCTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcgg                                           <  2:9215/149‑1 (MQ=255)                                                                                       aaCTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                            <  1:35300/148‑1 (MQ=255)                                                                                          tGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCaa                                        >  3:41030/1‑149 (MQ=255)                                                                                               aaaCAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGc                                                     >  8:73129/1‑131 (MQ=255)                                                                                               aaaCAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGc                                                     <  7:73129/131‑1 (MQ=255)                                                                                                   aGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCTCCCTGGCTCAACTGCGGCAAGCCCATAct                               <  2:358510/149‑2 (MQ=255)                                                                                                    ggTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGc                              <  2:47983/149‑1 (MQ=255)                                                                                                      ctCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCGGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTg                            <  8:36930/148‑1 (MQ=255)                                                                                                        cAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGc                           >  5:339215/1‑148 (MQ=255)                                                                                                        cAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGc                           <  6:339215/148‑1 (MQ=255)                                                                                                              aaaGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGTAACTCGc                    >  3:348488/1‑149 (MQ=255)                                                                                                              aaaGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGc                    >  5:274793/1‑149 (MQ=255)                                                                                                                   gcCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATcc               <  8:273666/149‑1 (MQ=255)                                                                                                                    cccAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATc                >  7:333140/1‑147 (MQ=255)                                                                                                                     ccAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAg             <  8:248835/149‑1 (MQ=255)                                                                                                                      cAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTAt                                                                                            <  7:136539/69‑1 (MQ=255)                                                                                                                      cAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTAt                                                                                            >  8:136539/1‑69 (MQ=255)                                                                                                                      cAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAgg            >  3:240583/1‑149 (MQ=255)                                                                                                                       aaGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATATGCTGCAACTCGCCATcc               >  3:176510/1‑145 (MQ=255)                                                                                                                       aaGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATATGCTGCAACTCGCCATcc               <  4:176510/145‑1 (MQ=255)                                                                                                                       aaGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGgc           <  5:210334/149‑1 (MQ=255)                                                                                                                        aGCGCCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtgagtgag          <  7:273666‑M1/149‑140 (MQ=255)                                                                                                                         gcgcCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtgagtgagc         >  4:308655‑M1/1‑9 (MQ=255)                                                                                                                         gcgcCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtg                <  3:191441‑M1/142‑134 (MQ=255)                                                                                                                         gcgcCGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtg                >  4:191441‑M1/1‑9 (MQ=255)                                                                                                                         gcgcCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgca                           <  8:11811‑M2/131‑85 (MQ=255)                                                                                                                         gcgcCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgca                           >  7:11811‑M2/1‑47 (MQ=255)                                                                                                                          cggcggcAgtgggcccaaggcgatgaaatggaccttgcggtggagttgccggcggttgggcgctttcggcttaacctgtttcgccagttgaatggcccggcgggtacctttcggactgatcccggggcgcattgcgacggtgagtgagc        <  1:47983‑M1/146‑142 (MQ=255)                                                                                                                          cgcCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGATGCAACTCGCCATCCAGGCgca        <  2:326247/149‑1 (MQ=255)                                                                                                                            ccGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggc                              >  4:134781‑M2/1‑44 (MQ=255)                                                                                                                            ccGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggc                              <  3:134781‑M2/125‑82 (MQ=255)                                                                                                                             cGGCAgtgggcccaaggcgatgaaatggaccttgcgctggagttgccggcgcttgggcgctttcggctgaacctgtttcgcgagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgccggtgagtgagctgga     >  5:344086‑M1/1‑5 (MQ=255)                                                                                                                               gCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCgcagc      >  7:60808/1‑146 (MQ=255)                                                                                                                               gCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCgcagc      <  8:60808/146‑1 (MQ=255)                                                                                                                                cAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCg  <  3:24835/149‑1 (MQ=255)                                                                                                                                 |                                                                                                                                                    AGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAG‑CCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCG  >  NC_002947/5817591‑5817865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.