New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5968431	30 (0.540)	4 (0.090)	3/212	NT	15.2%	coding (141/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	= 5968491	20 (0.440)					coding (81/360 nt)	PP_5723	hypothetical protein

AAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5968270‑5968431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgcgtcgcgattgggCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTG  <  NC_002947/5968491‑5968344                                                                                                                                                                                                                                                                                                                          AAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTG                                                                                                                                                                     >  7:51461/1‑149                                                                 TTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGC                                                                                                     >  2:12478/1‑149                                                                                 CGGGGCAAGCTGCGCGAAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATC                                                                                     <  1:12478/149‑1                                                                                                                   GAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATC                                                                                     <  1:104377/115‑1                                                                                                                   GAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATC                                                                                     >  2:104377/1‑115                                                                                                                                                 CCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTC                       >  1:333682/1‑145                                                                                                                                                 CCTTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAA                                                                                                                >  2:207807/1‑58                                                                                                                                                   TTGCGTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAG                 >  5:230177/1‑149                                                                                                                                                       GTCGCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAAACTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTG             >  1:94917/1‑149                                                                                                                                                         cggGATTGGCCTCCACAGGGGCCCGGTCAATATCAGCATAACGCCACAAATCTTGGGGGGCGGTTCGCACCCCAATCGCTACGCAAGGCTCCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTG             <  1:103400/146‑1                                                                                                                                                          GCGATTGGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCC          >  6:203251/1‑149                                                                                                                                                                GGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCG        <  3:31692/145‑1                                                                                                                                                                GGGCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCG        >  4:31692/1‑145                                                                                                                                                                  GCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTG  >  4:156193/1‑149                                                                                                                                                                  GCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCG                      <  1:305797/129‑1                                                                                                                                                                  GCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCG                      >  2:305797/1‑129                                                                                                                                                                                                                                                                                                                          AAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5968270‑5968431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgcgtcgcgattgggCTGCACAGCGGCCCCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGG‑‑CCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTG  <  NC_002947/5968491‑5968344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.