New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5982220 =	53 (0.960)	3 (0.060)	3/244	NT	5.0%	coding (2865/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5982264 =	63 (1.190)					coding (2909/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

AACCAGGTGGTTGCAGGCATAGCAGCTCATCGCCAGGTCACCGCTCAGGCGCGCCGAGTCGACCGCGTCCAGCGCGGTACGTCGGGCGAATTCCATGGGCGAGGTCCAGGCGCTGACCTGATCCAGGGCCAGCAGCGCGCTGGTCAGATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5982373‑5982220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCACCTGGTTTCAGATTCGCTGTTCATGGGCCGCTACCTGCCGGAC  >  NC_002947/5982264‑5982409                                                                                                                                                                                                                                                                                                              AACCAGGTGGTTGCAGGCATAGCAGCTCATCGCCAGGTCACCGCTCAGGCGCGCCGAGTCGACCGCGTCCAGCGCGGTACGTCGGGCGAATTCCATGGGCGAGGTCCAGGCGCTGACCTGATCCAGGGCCAGCAGCGCGCTGGTCAGAT                                                                                                                                                         <  5:293026/149‑1     agggcGTTGCAGGCATAGCAGCTCATCGCCAGGTCACCGCTCAGGCGCGCCGAGTCGACCGCGTCCAGCGCGGTACGTCGGGCGAATTCCATGGGCGAGGTCCAGGCGCTGACCTGATCCAGGGCCAGCAGCACGCTGTTCAGATCAGC                                                                                                                                                     <  4:57425/144‑1                                                                                                             GGCGCTGACCTGATCCAGGGCCAGCAGCGCGCTGGTCAGATCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCA                                             >  5:98090/1‑149                                                                                                                        GATCCAGGGCCAGCAGCGCGCTGGTCAGATCAGCGCCTGGACCTCGCCCAT                                                                                                                                    >  5:148885/1‑51                                                                                                                        GATCCAGGGCCAGCAGCGCGCTGGTCAGATCAGCGCCTGGACCTCGCCCAT                                                                                                                                    <  6:148885/51‑1                                                                                                                                                        GCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCACCTGGTTTCAGATTCGCTGTTCATGGGCCGCTACCTGCCGGAC  <  6:292375/149‑1                                                                                                                                                                                                                                                                                                              AACCAGGTGGTTGCAGGCATAGCAGCTCATCGCCAGGTCACCGCTCAGGCGCGCCGAGTCGACCGCGTCCAGCGCGGTACGTCGGGCGAATTCCATGGGCGAGGTCCAGGCGCTGACCTGATCCAGGGCCAGCAGCGCGCTGGTCAGATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5982373‑5982220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCACCTGGTTTCAGATTCGCTGTTCATGGGCCGCTACCTGCCGGAC  >  NC_002947/5982264‑5982409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.