New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5982220 =	53 (0.960)	3 (0.060)	3/244	NT	5.0%	coding (2865/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5982264 =	63 (1.190)					coding (2909/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

TTGTCGCTACTGCACGGCGTTGCCCCTGGCAGCACCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCAC  >  NC_002947/5982074‑5982367                                                                                                                                                   |                                                                                                                                                    ttGTCGCTACTGCACGGCGTTGCCCCTGGCAGCACCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGc                                                                                                                                                   >  3:154134/1‑149 (MQ=255) gtccggcaggtagcggcccatgaacagcgaatctgaaaccaggtggttgcaggcatagcagctcatcgccaggtcaccgctcaggcgcgccgagtcgaccgcgtccagcgcggtacgtcgggcgaattccatgggcgaggtccaggcgc                                                                                                                                                   <  6:292375‑M1/3‑1 (MQ=255)                             gcagcaCCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCt                                                                                                                        <  8:193689/148‑1 (MQ=255)                             gcagcaCCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTg                                                                                                                       >  1:252394/1‑149 (MQ=255)                               agcaCCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGa                                                                                                                     >  1:18180/1‑149 (MQ=255)                               agcaCCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGa                                                                                                                     >  6:104487/1‑149 (MQ=255)                                 caCCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATc                                                                                                                   <  2:18180/149‑1 (MQ=255)                                     tACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTg                                                                                                                       <  3:245559/141‑1 (MQ=255)                                     tACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTg                                                                                                                       >  4:245559/1‑141 (MQ=255)                                            tggttgcaggcatagcagctcatcgccaggtcaccgctcaggcgcgccgagtcgaccgcgtccagcgcggtacgtcgggcgaattccatgggcgaggtccaggCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGcc                                                                                                        >  5:98090‑M1/104‑149 (MQ=255)                                              gCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCt                                                                                                       <  2:130137/148‑1 (MQ=255)                                                cTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGTCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGa                                                                                                    <  5:282098/149‑1 (MQ=255)                                                 tGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGAc                                                                                                   >  8:322094/1‑149 (MQ=255)                                                   gTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCt                                                                                                 >  4:322279/1‑149 (MQ=255)                                                      cGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGc                                                                                              <  7:152267/149‑1 (MQ=255)                                                                     cGAGCGTTTTGGCTCTTACCATTATGGCCATGCGTGTTGACTGGCCGCGCTCAAGCTGATCCCACGGCACCGGTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTCGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGccc                                                                               <  7:151464/149‑1 (MQ=255)                                                                     cGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCgctg                                                                                                                                >  7:172538/1‑100 (MQ=255)                                                                     cGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCgctg                                                                                                                                <  8:172538/100‑1 (MQ=255)                                                                     cGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGccc                                                                               >  8:315569/1‑149 (MQ=255)                                                                     cGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGccc                                                                               >  6:189154/1‑149 (MQ=255)                                                                        gCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGAc                                                                            <  7:322094/149‑1 (MQ=255)                                                                                 cgcTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTGCCgcgc                                                                   <  3:322279/149‑1 (MQ=255)                                                                                 cgcTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCgcgc                                                                   >  3:69365/1‑149 (MQ=255)                                                                                   cTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTAcc                                                                       <  7:278364/143‑1 (MQ=255)                                                                                   cTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTAcc                                                                       >  8:278364/1‑143 (MQ=255)                                                                                      aCCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGAc                                                              >  7:295201/1‑149 (MQ=255)                                                                                       ccATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGAc                                                              <  8:295201/148‑1 (MQ=255)                                                                                       ccATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCCGATCTGACCAGCGCGCTGCTGGCCCTGGATCa                                                                                                                  >  8:135890/1‑96 (MQ=255)                                                                                       ccATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCCGATCTGACCAGCGCGCTGCTGGCCCTGGATCa                                                                                                                  <  7:135890/96‑1 (MQ=255)                                                                                        cATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCa                                                                                                             <  5:223241/100‑1 (MQ=255)                                                                                        cATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCa                                                                                                             >  6:223241/1‑100 (MQ=255)                                                                                        cATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGcc                                                                                <  2:47035/129‑1 (MQ=255)                                                                                          tgatgGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATg                                                                                         >  3:229105/1‑118 (MQ=255)                                                                                          tgatgGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATg                                                                                         <  4:229105/118‑1 (MQ=255)                                                                                          tgatgGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCgg                                                          <  7:4742/149‑1 (MQ=255)                                                                                           gatgGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGt                                                         <  7:315569/149‑1 (MQ=255)                                                                                            atgGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTc                                                        <  5:104487/149‑1 (MQ=255)                                                                                                      cTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGgcgc                                              <  3:117632/149‑1 (MQ=255)                                                                                                        gTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGgcgcgc                                            >  3:39042/1‑149 (MQ=255)                                                                                                            ccTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCt                                          >  8:101556/1‑147 (MQ=255)                                                                                                              tGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGc                                                                                              >  8:149199/1‑93 (MQ=255)                                                                                                              tGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGc                                                                                              <  7:149199/93‑1 (MQ=255)                                                                                                                         aaGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGc                           <  7:101556/149‑1 (MQ=255)                                                                                                                           gCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGa                         >  3:310719/1‑149 (MQ=255)                                                                                                                            cTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGa                                                                             >  7:179424/1‑96 (MQ=255)                                                                                                                            cTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGa                                                                             <  8:179424/96‑1 (MQ=255)                                                                                                                               aTCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGa                      <  4:69365/148‑1 (MQ=255)                                                                                                                                  gAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGAt                        <  7:77765/143‑1 (MQ=255)                                                                                                                                  gAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGAt                        >  8:77765/1‑143 (MQ=255)                                                                                                                                  gAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAgctg                  >  2:162917/1‑149 (MQ=255)                                                                                                                                   atgggcgaggtccaggCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATc                                                                                                                   <  6:148885‑M1/35‑1 (MQ=255)                                                                                                                                   atgggcgaggtccaggCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATc                                                                                                                   >  5:148885‑M1/17‑51 (MQ=255)                                                                                                                                       gCAGGGTTTCGACGGTGTTCTGACCAGGGCGGTGCTGGCCCTGGATAAGGTCAGGGCCTGGACCTCGCCCATGTAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAg                     <  6:230265/141‑1 (MQ=255)                                                                                                                                       gCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACcgcg                                                                    >  6:251148/1‑94 (MQ=255)                                                                                                                                       gCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACcgcg                                                                    <  5:251148/94‑1 (MQ=255)                                                                                                                                       gCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCTCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAg                     >  5:230265/1‑141 (MQ=255)                                                                                                                                             tttCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGc        >  7:163910/1‑148 (MQ=255)                                                                                                                                             tttCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGc        >  3:307135/1‑148 (MQ=255)                                                                                                                                              ttCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGAACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCaa      >  6:52134/1‑149 (MQ=255)                                                                                                                                               tCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCaa      <  5:189154/148‑1 (MQ=255)                                                                                                                                                 gACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGAcgcg                                                           >  6:62940/1‑93 (MQ=255)                                                                                                                                                 gACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGAcgcg                                                           <  5:62940/93‑1 (MQ=255)                                                                                                                                                 gACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAacca   >  1:285202/1‑149 (MQ=255)                                                                                                                                                  aCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGAc                                <  2:346064/119‑1 (MQ=255)                                                                                                                                                  aCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGAc                                >  1:346064/1‑119 (MQ=255)                                                                                                                                                  aCGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGAACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAaccac  <  5:52134/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TTGTCGCTACTGCACGGCGTTGCCCCTGGCAGCACCTACGGCATGGCCTGGTACGGCGTGATGATTGCCGAGCGTTTTGGCGCTTACCATGATGGCCATGCCTGTTGCCTGGCCGCGCTCAAGCTGATCGAACGGCACGGTTTCGACGCTGATCTGACCAGCGCGCTGCTGGCCCTGGATCAGGTCAGCGCCTGGACCTCGCCCATGGAATTCGCCCGACGTACCGCGCTGGACGCGGTCGACTCGGCGCGCCTGAGCGGTGACCTGGCGATGAGCTGCTATGCCTGCAACCAC  >  NC_002947/5982074‑5982367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.